Literature DB >> 12814858

Genome scale mapping of brain gene expression.

Ram P Singh1, Desmond J Smith.   

Abstract

Two new approaches, voxelation and gene expression tomography (GET), permit multiplex acquisition of gene expression patterns in the brain. Both methods result in volumetric images of gene expression analogous to those produced in biomedical imaging systems. Voxelation employs analysis of spatially registered cubes from the brain, whereas GET entails analysis of parallel slices obtained by rotation about multiple axes. These methods have been used to investigate neurologic diseases and their models in both humans and mice. The results of these studies are discussed, as is the future of high-throughput gene expression mapping in the brain.

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Year:  2003        PMID: 12814858     DOI: 10.1016/s0006-3223(03)00238-5

Source DB:  PubMed          Journal:  Biol Psychiatry        ISSN: 0006-3223            Impact factor:   13.382


  7 in total

1.  Investigation of different transcript quantitation tools for high-throughput mapping of brain gene expression using voxelation.

Authors:  Ram P Singh; Dahai Liu; Abhijit Chaudhari; Simon R Cherry; Richard M Leahy; Desmond J Smith
Journal:  J Mol Histol       Date:  2004-05       Impact factor: 2.611

Review 2.  Microarrays and the microscope: balancing throughput with resolution.

Authors:  Giovanni Coppola; Daniel H Geschwind
Journal:  J Physiol       Date:  2006-06-29       Impact factor: 5.182

3.  Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry.

Authors:  Vladislav A Petyuk; Wei-Jun Qian; Mark H Chin; Haixing Wang; Eric A Livesay; Matthew E Monroe; Joshua N Adkins; Navdeep Jaitly; David J Anderson; David G Camp; Desmond J Smith; Richard D Smith
Journal:  Genome Res       Date:  2007-01-25       Impact factor: 9.043

4.  Quantifying mRNA levels across tissue sections with 2D-RT-qPCR.

Authors:  Michael Armani; Michael A Tangrea; Benjamin Shapiro; Michael R Emmert-Buck; Elisabeth Smela
Journal:  Anal Bioanal Chem       Date:  2011-05-11       Impact factor: 4.142

5.  Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment.

Authors:  Haixing Wang; Wei-Jun Qian; Mark H Chin; Vladislav A Petyuk; Richard C Barry; Tao Liu; Marina A Gritsenko; Heather M Mottaz; Ronald J Moore; David G Camp Ii; Arshad H Khan; Desmond J Smith; Richard D Smith
Journal:  J Proteome Res       Date:  2006-02       Impact factor: 4.466

6.  Anatomical methods for voxelation of the mammalian brain.

Authors:  Daniel M Sforza; Jacopo Annese; Dahai Liu; Shawn Levy; Arthur W Toga; Desmond J Smith
Journal:  Neurochem Res       Date:  2004-06       Impact factor: 3.996

7.  Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry.

Authors:  Vladislav A Petyuk; Wei-Jun Qian; Richard D Smith; Desmond J Smith
Journal:  Methods       Date:  2009-08-03       Impact factor: 3.608

  7 in total

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