Literature DB >> 1280998

Constrained and restrained refinement in EXAFS data analysis with curved wave theory.

N Binsted1, R W Strange, S S Hasnain.   

Abstract

This paper describes methods of constrained and restrained refinement of EXAFS data which provide a means of substantially reducing the number of independent parameters compared to conventional least-squares methods commonly used. Constrained refinement allows a major reduction in the number of free parameters for a refinement of a structural model. In restrained refinement, additional structural information from well-characterized small molecules is used to provide additional observations in the data analysis. Even though these methods are of general application to the majority of complex systems, they are particularly valuable for biological molecules. The methods are of major advantage for ligands where significant multiple scattering is present, e.g., histidine, tyrosine, CO, CN, etc. The bases of these methods are described, and applications to some complex chemical and biological systems are given.

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Year:  1992        PMID: 1280998     DOI: 10.1021/bi00163a021

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

1.  Copper-zinc cross-modulation in prion protein binding.

Authors:  Francesco Stellato; Velia Minicozzi; Glenn L Millhauser; Marco Pascucci; Olivier Proux; Giancarlo C Rossi; Ann Spevacek; Silvia Morante
Journal:  Eur Biophys J       Date:  2014-11-14       Impact factor: 1.733

2.  A new method to determine the structure of the metal environment in metalloproteins: investigation of the prion protein octapeptide repeat Cu(2+) complex.

Authors:  Matthias Mentler; Andreas Weiss; Klaus Grantner; Pablo del Pino; Dominga Deluca; Stella Fiori; Christian Renner; Wolfram Meyer Klaucke; Luis Moroder; Uwe Bertsch; Hans A Kretzschmar; Paul Tavan; Fritz G Parak
Journal:  Eur Biophys J       Date:  2004-09-28       Impact factor: 1.733

3.  Structural Change of the Mn Cluster during the S2→S3 State Transition of the Oxygen-Evolving Complex of Photosystem II. Does It Reflect the Onset of Water/Substrate Oxidation? Determination by Mn X-ray Absorption Spectroscopy.

Authors:  Wenchuan Liang; Theo A Roelofs; Roehl M Cinco; Annette Rompel; Matthew J Latimer; Wa O Yu; Kenneth Sauer; Melvin P Klein; Vittal K Yachandra
Journal:  J Am Chem Soc       Date:  2000-04-12       Impact factor: 15.419

4.  Strontium EXAFS Reveals the Proximity of Calcium to the Manganese Cluster of Oxygen-Evolving Photosystem II.

Authors:  Roehl M Cinco; John H Robblee; Annette Rompel; Carmen Fernandez; Vittal K Yachandra; Kenneth Sauer; Melvin P Klein
Journal:  J Phys Chem B       Date:  1998-10-15       Impact factor: 2.991

5.  The configuration of the Cu2+ binding region in full-length human prion protein.

Authors:  Pablo del Pino; Andreas Weiss; Uwe Bertsch; Christian Renner; Matthias Mentler; Klaus Grantner; Ferdinando Fiorino; Wolfram Meyer-Klaucke; Luis Moroder; Hans A Kretzschmar; Fritz G Parak
Journal:  Eur Biophys J       Date:  2007-01-16       Impact factor: 1.733

6.  Binding of chromium(VI) to histones: implications for chromium(VI)-induced genotoxicity.

Authors:  Aviva Levina; Hugh H Harris; Peter A Lay
Journal:  J Biol Inorg Chem       Date:  2005-12-15       Impact factor: 3.358

7.  Distorted octahedral coordination of tungstate in a subfamily of specific binding proteins.

Authors:  Kaspar Hollenstein; Mireia Comellas-Bigler; Loes E Bevers; Martin C Feiters; Wolfram Meyer-Klaucke; Peter-Leon Hagedoorn; Kaspar P Locher
Journal:  J Biol Inorg Chem       Date:  2009-02-21       Impact factor: 3.358

8.  X-Ray absorption studies of Zn2+ binding sites in bacterial, avian, and bovine cytochrome bc1 complexes.

Authors:  Lisa Giachini; Francesco Francia; Giulia Veronesi; Dong-Woo Lee; Fevzi Daldal; Li-Shar Huang; Edward A Berry; Tiziana Cocco; Sergio Papa; Federico Boscherini; Giovanni Venturoli
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

9.  The fe2+ site of photosynthetic reaction centers probed by multiple scattering x-ray absorption fine structure spectroscopy: improving structure resolution in dry matrices.

Authors:  Giulia Veronesi; Lisa Giachini; Francesco Francia; Antonia Mallardi; Gerardo Palazzo; Federico Boscherini; Giovanni Venturoli
Journal:  Biophys J       Date:  2008-05-02       Impact factor: 4.033

10.  Zinc- and iron-dependent cytosolic metallo-beta-lactamase domain proteins exhibit similar zinc-binding affinities, independent of an atypical glutamate at the metal-binding site.

Authors:  Oliver Schilling; Andreas Vogel; Brenda Kostelecky; Hugo Natal da Luz; Daniel Spemann; Bettina Späth; Anita Marchfelder; Wolfgang Tröger; Wolfram Meyer-Klaucke
Journal:  Biochem J       Date:  2005-01-01       Impact factor: 3.857

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