Literature DB >> 12805582

Identification of Arabidopsis rat mutants.

Yanmin Zhu1, Jaesung Nam, Jaime M Humara, Kirankumar S Mysore, Lan-Ying Lee, Hongbin Cao, Lisa Valentine, Jingling Li, Anthony D Kaiser, Andrea L Kopecky, Hau-Hsuan Hwang, Saikat Bhattacharjee, Praveen K Rao, Tzvi Tzfira, Jyothi Rajagopal, HoChul Yi, Badam S Yadav, Yan M Crane, Kui Lin, Yves Larcher, Matthew J K Gelvin, Marnie Knue, Cynthia Ramos, Xiaowen Zhao, Susan J Davis, Sang-Ic Kim, C T Ranjith-Kumar, Yoo-Jin Choi, Vipin K Hallan, Sudip Chattopadhyay, Xiangzhen Sui, Alicja Ziemienowicz, Ann G Matthysse, Vitaly Citovsky, Barbara Hohn, Stanton B Gelvin.   

Abstract

Limited knowledge currently exists regarding the roles of plant genes and proteins in the Agrobacterium tumefaciens-mediated transformation process. To understand the host contribution to transformation, we carried out root-based transformation assays to identify Arabidopsis mutants that are resistant to Agrobacterium transformation (rat mutants). To date, we have identified 126 rat mutants by screening libraries of T-DNA insertion mutants and by using various "reverse genetic" approaches. These mutants disrupt expression of genes of numerous categories, including chromatin structural and remodeling genes, and genes encoding proteins implicated in nuclear targeting, cell wall structure and metabolism, cytoskeleton structure and function, and signal transduction. Here, we present an update on the identification and characterization of these rat mutants.

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Year:  2003        PMID: 12805582      PMCID: PMC166992          DOI: 10.1104/pp.103.020420

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  36 in total

1.  Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes.

Authors:  Gabino Ríos; Andrea Lossow; Britta Hertel; Frank Breuer; Sabine Schaefer; Melanie Broich; Tatjana Kleinow; Ján Jásik; Jochen Winter; Alejandro Ferrando; Rosa Farrás; Mireia Panicot; Rossana Henriques; Jean-Baptist Mariaux; Attila Oberschall; Gergely Molnár; Kenneth Berendzen; Vijaya Shukla; Marcel Lafos; Zsuzsanna Koncz; George P Rédei; Jeff Schell; Csaba Koncz
Journal:  Plant J       Date:  2002-10       Impact factor: 6.417

2.  T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.

Authors:  Véronique Brunaud; Sandrine Balzergue; Bertrand Dubreucq; Sébastien Aubourg; Franck Samson; Stéphanie Chauvin; Nicole Bechtold; Corinne Cruaud; Richard DeRose; Georges Pelletier; Loïc Lepiniec; Michel Caboche; Alain Lecharny
Journal:  EMBO Rep       Date:  2002-11-21       Impact factor: 8.807

3.  Genes encoding a histone H3.3-like variant in Arabidopsis contain intervening sequences.

Authors:  N Chaubet; B Clement; C Gigot
Journal:  J Mol Biol       Date:  1992-05-20       Impact factor: 5.469

4.  Differences in susceptibility of Arabidopsis ecotypes to crown gall disease may result from a deficiency in T-DNA integration.

Authors:  J Nam; A G Matthysse; S B Gelvin
Journal:  Plant Cell       Date:  1997-03       Impact factor: 11.277

5.  Comparison between nuclear localization of nopaline- and octopine-specific Agrobacterium VirE2 proteins in plant, yeast and mammalian cells.

Authors:  T Tzfira; V Citovsky
Journal:  Mol Plant Pathol       Date:  2001-05-01       Impact factor: 5.663

6.  Identification of transferred DNA insertions within Arabidopsis genes involved in signal transduction and ion transport.

Authors:  P J Krysan; J C Young; F Tax; M R Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

7.  Epidermal cell differentiation in Arabidopsis determined by a Myb homolog, CPC.

Authors:  T Wada; T Tachibana; Y Shimura; K Okada
Journal:  Science       Date:  1997-08-22       Impact factor: 47.728

8.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

9.  Multiple copies of virG enhance the transient transformation of celery, carrot and rice tissues by Agrobacterium tumefaciens.

Authors:  C N Liu; X Q Li; S B Gelvin
Journal:  Plant Mol Biol       Date:  1992-12       Impact factor: 4.076

10.  Sequence-based identification of T-DNA insertion mutations in Arabidopsis: actin mutants act2-1 and act4-1.

Authors:  E C McKinney; N Ali; A Traut; K A Feldmann; D A Belostotsky; J M McDowell; R B Meagher
Journal:  Plant J       Date:  1995-10       Impact factor: 6.417

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  47 in total

Review 1.  The versatile bacterial type IV secretion systems.

Authors:  Eric Cascales; Peter J Christie
Journal:  Nat Rev Microbiol       Date:  2003-11       Impact factor: 60.633

2.  Deciphering the route of Ralstonia solanacearum colonization in Arabidopsis thaliana roots during a compatible interaction: focus at the plant cell wall.

Authors:  Catherine Digonnet; Yves Martinez; Nicolas Denancé; Marine Chasseray; Patrick Dabos; Philippe Ranocha; Yves Marco; Alain Jauneau; Deborah Goffner
Journal:  Planta       Date:  2012-06-24       Impact factor: 4.116

3.  Effect of arabinogalactan proteins from the root caps of pea and Brassica napus on Aphanomyces euteiches zoospore chemotaxis and germination.

Authors:  Marc Antoine Cannesan; Caroline Durand; Carole Burel; Christophe Gangneux; Patrice Lerouge; Tadashi Ishii; Karine Laval; Marie-Laure Follet-Gueye; Azeddine Driouich; Maïté Vicré-Gibouin
Journal:  Plant Physiol       Date:  2012-05-29       Impact factor: 8.340

4.  Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants.

Authors:  Masaki Endo; Yuichi Ishikawa; Keishi Osakabe; Shigeki Nakayama; Hidetaka Kaya; Takashi Araki; Kei-ichi Shibahara; Kiyomi Abe; Hiroaki Ichikawa; Lisa Valentine; Barbara Hohn; Seiichi Toki
Journal:  EMBO J       Date:  2006-11-16       Impact factor: 11.598

5.  Constitutive expression exposes functional redundancy between the Arabidopsis histone H2A gene HTA1 and other H2A gene family members.

Authors:  HoChul Yi; Nagesh Sardesai; Toshinori Fujinuma; Chien-Wei Chan; Stanton B Gelvin
Journal:  Plant Cell       Date:  2006-06-02       Impact factor: 11.277

6.  Frequency and character of alternative somatic recombination fates of paralogous genes during T-DNA integration.

Authors:  John G Jelesko; Kristy Carter; Yuki Kinoshita; Wilhelm Gruissem
Journal:  Mol Genet Genomics       Date:  2005-10-11       Impact factor: 3.291

Review 7.  Agrobacterium in the genomics age.

Authors:  Stanton B Gelvin
Journal:  Plant Physiol       Date:  2009-05-13       Impact factor: 8.340

8.  Agrobacterium T-DNA integration in Arabidopsis is correlated with DNA sequence compositions that occur frequently in gene promoter regions.

Authors:  Richard G Schneeberger; Ke Zhang; Tatiana Tatarinova; Max Troukhan; Shing F Kwok; Josh Drais; Kevin Klinger; Francis Orejudos; Kimberly Macy; Amit Bhakta; James Burns; Gopal Subramanian; Jonathan Donson; Richard Flavell; Kenneth A Feldmann
Journal:  Funct Integr Genomics       Date:  2005-03-03       Impact factor: 3.410

Review 9.  Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria.

Authors:  Anja Brencic; Stephen C Winans
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

10.  RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation.

Authors:  Yan Ma Crane; Stanton B Gelvin
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-07       Impact factor: 11.205

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