Literature DB >> 12801718

Splicing goes global.

J David Barrass1, Jean D Beggs.   

Abstract

Transcriptomics, the analysis of the complement of mRNAs transcribed from a cell's genome, currently focuses mainly on mature, processed mRNAs. However, posttranscriptional processing of primary transcripts can significantly affect both the quantity and the structure of the mature mRNAs and therefore of the protein products. Recently, the development of an intron-specific microarray has permitted a preliminary analysis of the splicing of all intron-containing transcripts in Saccharomyces cerevisiae. Here, we discuss the findings and what might be learned from this kind of approach.

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Year:  2003        PMID: 12801718     DOI: 10.1016/S0168-9525(03)00091-X

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  8 in total

1.  Systematic identification of factors involved in post-transcriptional processes in wheat grain.

Authors:  Sergiy Lopato; Ljudmilla Borisjuk; Andrew S Milligan; Neil Shirley; Natalia Bazanova; Kate Parsley; Peter Langridge
Journal:  Plant Mol Biol       Date:  2006-08-29       Impact factor: 4.076

2.  Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion.

Authors:  Nuno L Barbosa-Morais; Maria Carmo-Fonseca; Samuel Aparício
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

Review 3.  RNA processing and export.

Authors:  Sami Hocine; Robert H Singer; David Grünwald
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-10-20       Impact factor: 10.005

4.  Interaction of yeast eIF4G with spliceosome components: implications in pre-mRNA processing events.

Authors:  Panagiota Kafasla; J David Barrass; Elizabeth Thompson; Micheline Fromont-Racine; Alain Jacquier; Jean D Beggs; Joe Lewis
Journal:  RNA Biol       Date:  2009-11-18       Impact factor: 4.652

5.  Comparative analysis detects dependencies among the 5' splice-site positions.

Authors:  Ido Carmel; Saar Tal; Ida Vig; Gil Ast
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

6.  Analysis of a splice array experiment elucidates roles of chromatin elongation factor Spt4-5 in splicing.

Authors:  Yuanyuan Xiao; Yee H Yang; Todd A Burckin; Lily Shiue; Grant A Hartzog; Mark R Segal
Journal:  PLoS Comput Biol       Date:  2005-09-16       Impact factor: 4.475

7.  A new role for FBP21 as regulator of Brr2 helicase activity.

Authors:  Lisa M Henning; Karine F Santos; Jana Sticht; Stefanie Jehle; Chung-Tien Lee; Malte Wittwer; Henning Urlaub; Ulrich Stelzl; Markus C Wahl; Christian Freund
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

8.  RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing.

Authors:  Takayuki Nojima; Kenny Rebelo; Tomás Gomes; Ana Rita Grosso; Nicholas J Proudfoot; Maria Carmo-Fonseca
Journal:  Mol Cell       Date:  2018-10-18       Impact factor: 17.970

  8 in total

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