Literature DB >> 1279733

Asymptotic distributions of apparent open times and shut times in a single channel record allowing for the omission of brief events.

A G Hawkes1, A Jalali, D Colquhoun.   

Abstract

The openings and shuttings of individual ion channel molecules can be described by a Markov process with discrete states in continuous time. The predicted distributions of the durations of open times, shut times, bursts of openings, etc. are all described, in principle, by mixtures of exponential densities. In practice it is usually found that some of the open times, and the shut times, are too short to be detected reliably. If a fixed dead-time tau is assumed then it is possible to define, as an approximation to what is actually observed, an 'extended opening' or e-opening which starts with an opening of duration at least tau followed by any number of openings and shuttings, all the shut times being shorter than tau; the e-opening ends when a shut time longer than tau occurs. A similar definition is used for e-shut times. The probability densities, f(t), of these extended times have previously been obtained as expressions which become progressively more complicated, and numerically unstable to compute, as t-->infinity. In this paper we present, for the two-state model, an alternative representation as an infinite series of which a small number of terms gives a very accurate approximation of f (t) for large t. For the general model we present an asymptotic representation as a mixture of exponentials which is accurate for all except quite small values of t. Some simple model-independent corrections for missed events are discussed in relationship to the exact solutions.

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Year:  1992        PMID: 1279733     DOI: 10.1098/rstb.1992.0116

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  54 in total

1.  The quality of maximum likelihood estimates of ion channel rate constants.

Authors:  D Colquhoun; C J Hatton; A G Hawkes
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2.  Model-based fitting of single-channel dwell-time distributions.

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3.  Short isoforms of the cold receptor TRPM8 inhibit channel gating by mimicking heat action rather than chemical inhibitors.

Authors:  José A Fernández; Roman Skryma; Gabriel Bidaux; Karl L Magleby; C Norman Scholfield; J Graham McGeown; Natalia Prevarskaya; Alexander V Zholos
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

Review 4.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

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Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

5.  What can one learn from two-state single-molecule trajectories?

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6.  Maximum likelihood fitting of single channel NMDA activity with a mechanism composed of independent dimers of subunits.

Authors:  Stephanie Schorge; Sergio Elenes; David Colquhoun
Journal:  J Physiol       Date:  2005-10-13       Impact factor: 5.182

7.  Maximum likelihood estimation of ion channel kinetics from macroscopic currents.

Authors:  Lorin S Milescu; Gustav Akk; Frederick Sachs
Journal:  Biophys J       Date:  2005-01-28       Impact factor: 4.033

8.  Short openings in high resolution single channel recordings of mouse nicotinic receptors.

Authors:  Stefan Hallermann; Sabine Heckmann; Josef Dudel; Manfred Heckmann
Journal:  J Physiol       Date:  2005-01-27       Impact factor: 5.182

9.  Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences.

Authors:  Lorin S Milescu; Ahmet Yildiz; Paul R Selvin; Frederick Sachs
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

10.  Analysis of single ion channel data incorporating time-interval omission and sampling.

Authors:  Yu-Kai The; Jens Timmer
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

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