Literature DB >> 12787031

Dynamic model of Escherichia coli tryptophan operon shows an optimal structural design.

Sharad Bhartiya1, Subodh Rawool, K V Venkatesh.   

Abstract

A mathematical model has been developed to study the effect of external tryptophan on the trp operon. The model accounts for the effect of feedback repression by tryptophan through the Hill equation. We demonstrate that the trp operon maintains an intracellular steady-state concentration in a fivefold range irrespective of extracellular conditions. Dynamic behavior of the trp operon corresponding to varying levels of extracellular tryptophan illustrates the adaptive nature of regulation. Depending on the external tryptophan level in the medium, the transient response ranges from a rapid and underdamped to a sluggish and highly overdamped response. To test model fidelity, simulation results are compared with experimental data available in the literature. We further demonstrate the significance of the biological structure of the operon on the overall performance. Our analysis suggests that the tryptophan operon has evolved to a truly optimal design.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12787031     DOI: 10.1046/j.1432-1033.2003.03641.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  4 in total

1.  Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series.

Authors:  Sharad Bhartiya; Nikhil Chaudhary; K V Venkatesh; Francis J Doyle
Journal:  J R Soc Interface       Date:  2006-06-22       Impact factor: 4.118

Review 2.  Towards the engineering of in vitro systems.

Authors:  Christoph Hold; Sven Panke
Journal:  J R Soc Interface       Date:  2009-05-27       Impact factor: 4.118

3.  Integration of transcriptional inputs at promoters of the arabinose catabolic pathway.

Authors:  Carla J Davidson; Atul Narang; Michael G Surette
Journal:  BMC Syst Biol       Date:  2010-06-02

4.  On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems.

Authors:  Lan K Nguyen; Don Kulasiri
Journal:  BMC Syst Biol       Date:  2009-05-11
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.