Literature DB >> 12776211

Sequence-based cancer genomics: progress, lessons and opportunities.

Robert L Strausberg1, Andrew J G Simpson, Richard Wooster.   

Abstract

Technologies that provide a genome-wide view offer an unprecedented opportunity to scrutinize the molecular biology of the cancer cell. The information that is derived from these technologies is well suited to the development of public databases of alterations in the cancer genome and its expression. Here, we describe the synergistic efforts of research programmes in Brazil, the United Kingdom and the United States towards building integrated databases that are widely accessible to the research community, to enable basic and applied applications in cancer research.

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Mesh:

Year:  2003        PMID: 12776211     DOI: 10.1038/nrg1085

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  21 in total

1.  PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.

Authors:  Ken Chen; Michael D McLellan; Li Ding; Michael C Wendl; Yumi Kasai; Richard K Wilson; Elaine R Mardis
Journal:  Genome Res       Date:  2007-04-06       Impact factor: 9.043

2.  Modeling mutations in protein structures.

Authors:  Eric Feyfant; Andrej Sali; András Fiser
Journal:  Protein Sci       Date:  2007-09       Impact factor: 6.725

Review 3.  Clinical uses of microarrays in cancer research.

Authors:  Carl Virtanen; James Woodgett
Journal:  Methods Mol Med       Date:  2008

4.  Whole-genome cancer analysis as an approach to deeper understanding of tumour biology.

Authors:  R L Strausberg; A J G Simpson
Journal:  Br J Cancer       Date:  2009-12-22       Impact factor: 7.640

5.  SNP500Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes.

Authors:  Bernice R Packer; Meredith Yeager; Brian Staats; Robert Welch; Andrew Crenshaw; Maureen Kiley; Andrew Eckert; Michael Beerman; Edward Miller; Andrew Bergen; Nathaniel Rothman; Robert Strausberg; Stephen J Chanock
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

6.  Epstein-Barr virus-transformation of B-cell lines in ovarian cancer patients: feasibility of genomic storage for unlimited use.

Authors:  Sun-Young Kong; Sokbom Kang
Journal:  J Gynecol Oncol       Date:  2009-12-28       Impact factor: 4.401

7.  A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes.

Authors:  Timothy J Ley; Patrick J Minx; Matthew J Walter; Rhonda E Ries; Hui Sun; Michael McLellan; John F DiPersio; Daniel C Link; Michael H Tomasson; Timothy A Graubert; Howard McLeod; Hanna Khoury; Mark Watson; William Shannon; Kathryn Trinkaus; Sharon Heath; James W Vardiman; Michael A Caligiuri; Clara D Bloomfield; Jeffrey D Milbrandt; Elaine R Mardis; Richard K Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-12       Impact factor: 11.205

Review 8.  Utilizing the molecular gateway: the path to personalized cancer management.

Authors:  Jonathan B Overdevest; Dan Theodorescu; Jae K Lee
Journal:  Clin Chem       Date:  2009-02-26       Impact factor: 8.327

9.  A comparison of two methods for screening CEBPA mutations in patients with acute myeloid leukemia.

Authors:  Jeung-Yeal Ahn; Katie Seo; Olga Weinberg; Scott D Boyd; Daniel A Arber
Journal:  J Mol Diagn       Date:  2009-06-12       Impact factor: 5.568

10.  Surface-enhanced Raman scattering based ligase detection reaction.

Authors:  Yun Suk Huh; Adam J Lowe; Aaron D Strickland; Carl A Batt; David Erickson
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

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