Literature DB >> 12773626

A major role for the TATA box in recruitment of chromatin modifying complexes to a globin gene promoter.

Chang-Yun Gui1, Ann Dean.   

Abstract

The developmentally regulated mammalian beta-globin genes are activated by a distant locus control region/enhancer. To understand the role of chromatin remodeling complexes in this activation, we used stably replicated chromatin templates, in which transcription activation of the human embryonic epsilon-globin gene depends on the tandem Maf-recognition elements (MAREs) within the beta-globin locus control region HS2 enhancer, to which the erythroid factor NF-E2 binds. The HS2 MAREs are required for nucleosome mobilization and histone hyperacetylation at the distant promoter. Nucleosome mobilization also requires the promoter TATA box, and is independent of histone hyperacetylation. In contrast, promoter hyperacetylation requires the promoter GATA-1, and CACC-factor activator motifs, as well as the TATA box. ChIP analysis reveals that NF-E2 is associated with the active epsilon-globin promoter, which lacks an NF-E2 binding sequence, in a TATA box and HS2/MARE-dependent fashion. NF-E2 association with the epsilon-globin promoter coincides with that of RNA polymerase II at both regulatory sites. The results emphasize MARE-TATA box interactions in the recruitment of complexes modifying promoter chromatin for transcription activation and imply close physical interaction between widely separated regulatory sequences mediated through these sites.

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Year:  2003        PMID: 12773626      PMCID: PMC165821          DOI: 10.1073/pnas.1236499100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  63 in total

1.  Acetylation of a specific promoter nucleosome accompanies activation of the epsilon-globin gene by beta-globin locus control region HS2.

Authors:  C Y Gui; A Dean
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

2.  Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes.

Authors:  A H Hassan; K E Neely; J L Workman
Journal:  Cell       Date:  2001-03-23       Impact factor: 41.582

Review 3.  Chromatin remodeling enzymes: who's on first?

Authors:  C J Fry; C L Peterson
Journal:  Curr Biol       Date:  2001-03-06       Impact factor: 10.834

4.  A transient histone hyperacetylation signal marks nucleosomes for remodeling at the PHO8 promoter in vivo.

Authors:  H Reinke; P D Gregory; W Hörz
Journal:  Mol Cell       Date:  2001-03       Impact factor: 17.970

5.  Nucleosome sliding via TBP DNA binding in vivo.

Authors:  S Lomvardas; D Thanos
Journal:  Cell       Date:  2001-09-21       Impact factor: 41.582

6.  Silenced chromatin is permissive to activator binding and PIC recruitment.

Authors:  E A Sekinger; D S Gross
Journal:  Cell       Date:  2001-05-04       Impact factor: 41.582

7.  Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci.

Authors:  M D Litt; M Simpson; F Recillas-Targa; M N Prioleau; G Felsenfeld
Journal:  EMBO J       Date:  2001-05-01       Impact factor: 11.598

8.  Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter.

Authors:  K D Johnson; H M Christensen; B Zhao; E H Bresnick
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

9.  Activation of beta-major globin gene transcription is associated with recruitment of NF-E2 to the beta-globin LCR and gene promoter.

Authors:  T Sawado; K Igarashi; M Groudine
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

Review 10.  Promoter targeting of chromatin-modifying complexes.

Authors:  A H Hassan; K E Neely; M Vignali; J C Reese; J L Workman
Journal:  Front Biosci       Date:  2001-09-01
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  9 in total

1.  A human globin enhancer causes both discrete and widespread alterations in chromatin structure.

Authors:  AeRi Kim; Ann Dean
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

2.  1H, 15N, and 13C resonance assignments and secondary structure of the SWIRM domain of human BAF155, a chromatin remodeling complex component.

Authors:  Sunjin Moon; Joon Shin; Dongju Lee; Rho H Seong; Weontae Lee
Journal:  Mol Cells       Date:  2013-08-29       Impact factor: 5.034

3.  Beta-globin intergenic transcription and histone acetylation dependent on an enhancer.

Authors:  Aeri Kim; Hui Zhao; Ina Ifrim; Ann Dean
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

Review 4.  Chromatin loop formation in the β-globin locus and its role in globin gene transcription.

Authors:  Aeri Kim; Ann Dean
Journal:  Mol Cells       Date:  2012-05-18       Impact factor: 5.034

5.  Repression of human gamma-globin gene expression by a short isoform of the NF-E4 protein is associated with loss of NF-E2 and RNA polymerase II recruitment to the promoter.

Authors:  Quan Zhao; Wenlai Zhou; Gerhard Rank; Rosemary Sutton; Xi Wang; Helen Cumming; Loretta Cerruti; John M Cunningham; Stephen M Jane
Journal:  Blood       Date:  2005-11-01       Impact factor: 22.113

6.  Differential requirement of a distal regulatory region for pre-initiation complex formation at globin gene promoters.

Authors:  Julie Ross; Stefania Bottardi; Vincent Bourgoin; Alex Wollenschlaeger; Elliot Drobetsky; Marie Trudel; Eric Milot
Journal:  Nucleic Acids Res       Date:  2009-06-30       Impact factor: 16.971

7.  Histone deacetylase (HDAC) inhibitor activation of p21WAF1 involves changes in promoter-associated proteins, including HDAC1.

Authors:  C-Y Gui; L Ngo; W S Xu; V M Richon; P A Marks
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-20       Impact factor: 11.205

8.  An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene.

Authors:  Hui Zhao; Ann Dean
Journal:  Nucleic Acids Res       Date:  2004-09-15       Impact factor: 16.971

9.  Nucleosome and transcription activator antagonism at human beta-globin locus control region DNase I hypersensitive sites.

Authors:  AeRi Kim; Sang-hyun Song; Marjorie Brand; Ann Dean
Journal:  Nucleic Acids Res       Date:  2007-08-24       Impact factor: 16.971

  9 in total

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