Literature DB >> 12769575

Investigation of solvent effects for the Claisen rearrangement of chorismate to prephenate: mechanistic interpretation via near attack conformations.

Matthew P Repasky1, Cristiano Ruch Werneck Guimarães, Jayaraman Chandrasekhar, Julian Tirado-Rives, William L Jorgensen.   

Abstract

Solvent effects on the rate of the Claisen rearrangement of chorismate to prephenate have been examined in water and methanol. The preequilibrium free-energy differences between diaxial and diequatorial conformers of chorismate, which had previously been implicated as the sole basis for the observed 100-fold rate increase in water over methanol, have been reframed using the near attack conformation (NAC) concept of Bruice and co-workers. Using a combined QM/MM Monte Carlo/free-energy perturbation (MC/FEP) method, 82%, 57%, and 1% of chorismate conformers were found to be NAC structures (NACs) in water, methanol, and the gas phase, respectively. As a consequence, the conversion of non-NACs to NACs provides no free-energy contributions to the overall relative reaction rates in water versus methanol. Free-energy perturbation calculations yielded differences in free energies of activation for the two polar protic solvents and the gas phase. The rate enhancement in water over the gas phase arises from preferential hydration of the transition state (TS) relative to the reactants via increased hydrogen bonding and long-range electrostatic interactions, which accompany bringing the two negatively charged carboxylates into closer proximity. More specifically, there is an increase of 1.3 and 0.6 hydrogen bonds to the carboxylate groups and the ether oxygen, respectively, in going from the reactant to the TS in water. In methanol, the corresponding changes in hydrogen bonding with first shell solvent molecules are small; the rate enhancement arises primarily from the enhanced long-range interactions with solvent molecules. Thus, the reaction occurs faster in water than in methanol due to greater stabilization of the TS in water by specific interactions with first shell solvent molecules.

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Year:  2003        PMID: 12769575     DOI: 10.1021/ja021423z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  The near attack conformation approach to the study of the chorismate to prephenate reaction.

Authors:  Sun Hur; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-01       Impact factor: 11.205

2.  The proficiency of a thermophilic chorismate mutase enzyme is solely through an entropic advantage in the enzyme reaction.

Authors:  Xiaohua Zhang; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-12       Impact factor: 11.205

3.  A dynamic view of enzyme catalysis.

Authors:  Aurora Jiménez; Pere Clapés; Ramon Crehuet
Journal:  J Mol Model       Date:  2008-03-06       Impact factor: 1.810

4.  Origin of the activity drop with the E50D variant of catalytic antibody 34E4 for Kemp elimination.

Authors:  Anastassia N Alexandrova; William L Jorgensen
Journal:  J Phys Chem B       Date:  2009-01-15       Impact factor: 2.991

5.  Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination.

Authors:  Anastassia N Alexandrova; Daniela Röthlisberger; David Baker; William L Jorgensen
Journal:  J Am Chem Soc       Date:  2008-11-26       Impact factor: 15.419

6.  Aromatic Claisen Rearrangements of O-prenylated tyrosine and model prenyl aryl ethers: Computational study of the role of water on acceleration of Claisen rearrangements.

Authors:  Sílvia Osuna; Seonah Kim; Guillaume Bollot; K N Houk
Journal:  European J Org Chem       Date:  2013-05-01

7.  Acceleration of an aromatic Claisen rearrangement via a designed spiroligozyme catalyst that mimics the ketosteroid isomerase catalytic dyad.

Authors:  Matthew F L Parker; Sílvia Osuna; Guillaume Bollot; Shivaiah Vaddypally; Michael J Zdilla; K N Houk; Christian E Schafmeister
Journal:  J Am Chem Soc       Date:  2014-02-27       Impact factor: 15.419

8.  Quantum chemical modeling of the reaction path of chorismate mutase based on the experimental substrate/product complex.

Authors:  Daniel Burschowsky; Ute Krengel; Einar Uggerud; David Balcells
Journal:  FEBS Open Bio       Date:  2017-05-02       Impact factor: 2.693

  8 in total

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