Literature DB >> 12762024

Overriding standard decoding: implications of recoding for ribosome function and enrichment of gene expression.

J F Atkins1, P V Baranov, O Fayet, A J Herr, M T Howard, I P Ivanov, S Matsufuji, W A Miller, B Moore, M F Prère, N M Wills, J Zhou, R F Gesteland.   

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Year:  2001        PMID： 12762024     DOI： 10.1101/sqb.2001.66.217

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN： 0091-7451


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  23 in total

1.  Maintenance of the correct open reading frame by the ribosome.

Authors:  Thomas M Hansen; Pavel V Baranov; Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

2.  RECODE 2003.

Authors:  Pavel V Baranov; Olga L Gurvich; Andrew W Hammer; Raymond F Gesteland; John F Atkins
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 3.  Slipping and sliding: frameshift mutations in herpes simplex virus thymidine kinase and drug-resistance.

Authors:  Anthony Griffiths
Journal:  Drug Resist Updat       Date:  2011-09-22       Impact factor: 18.500

Review 4.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

5.  Programmed translational -1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs.

Authors:  Patricia Licznar; Nina Mejlhede; Marie-Françoise Prère; Norma Wills; Raymond F Gesteland; John F Atkins; Olivier Fayet
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

6.  A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment.

Authors:  Virag Sharma; Andrew E Firth; Ivan Antonov; Olivier Fayet; John F Atkins; Mark Borodovsky; Pavel V Baranov
Journal:  Mol Biol Evol       Date:  2011-06-14       Impact factor: 16.240

7.  Expression levels influence ribosomal frameshifting at the tandem rare arginine codons AGG_AGG and AGA_AGA in Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  J Bacteriol       Date:  2005-06       Impact factor: 3.490

8.  A reassessment of the response of the bacterial ribosome to the frameshift stimulatory signal of the human immunodeficiency virus type 1.

Authors:  Mélissa Léger; Sacha Sidani; Léa Brakier-Gingras
Journal:  RNA       Date:  2004-07-09       Impact factor: 4.942

9.  Net -1 frameshifting on a noncanonical sequence in a herpes simplex virus drug-resistant mutant is stimulated by nonstop mRNA.

Authors:  Dongli Pan; Donald M Coen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-27       Impact factor: 11.205

10.  Recode-2: new design, new search tools, and many more genes.

Authors:  Michaël Bekaert; Andrew E Firth; Yan Zhang; Vadim N Gladyshev; John F Atkins; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2009-09-25       Impact factor: 16.971
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