Literature DB >> 12761666

Metal binding to Bacillus subtilis ferrochelatase and interaction between metal sites.

David Lecerof1, Michel N Fodje, Román Alvarez León, Ulf Olsson, Andreas Hansson, Emma Sigfridsson, Ulf Ryde, Mats Hansson, Salam Al-Karadaghi.   

Abstract

Ferrochelatase, the terminal enzyme in heme biosynthesis, catalyses metal insertion into protoporphyrin IX. The location of the metal binding site with respect to the bound porphyrin substrate and the mode of metal binding are of central importance for understanding the mechanism of porphyrin metallation. In this work we demonstrate that Zn(2+), which is commonly used as substrate in assays of the ferrochelatase reaction, and Cd(2+), an inhibitor of the enzyme, bind to the invariant amino acids His183 and Glu264 and water molecules, all located within the porphyrin binding cleft. On the other hand, Mg(2+), which has been shown to bind close to the surface at 7 A from His183, was largely absent from its site. Activity measurements demonstrate that Mg(2+) has a stimulatory effect on the enzyme, lowering K(M) for Zn(2+) from 55 to 24 micro M. Changing one of the Mg(2+) binding residues, Glu272, to serine abolishes the effect of Mg(2+). It is proposed that prior to metal insertion the metal may form a sitting-atop (SAT) complex with the invariant His-Glu couple and the porphyrin. Metal binding to the Mg(2+) site may stimulate metal release from the protein ligands and its insertion into the porphyrin.

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Year:  2003        PMID: 12761666     DOI: 10.1007/s00775-002-0436-1

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  26 in total

1.  Production of cobalamin and sirohaem in Bacillus megaterium: an investigation into the role of the branchpoint chelatases sirohydrochlorin ferrochelatase (SirB) and sirohydrochlorin cobalt chelatase (CbiX).

Authors:  H K Leech; E Raux-Deery; P Heathcote; M J Warren
Journal:  Biochem Soc Trans       Date:  2002-08       Impact factor: 5.407

2.  Structural and mechanistic basis of porphyrin metallation by ferrochelatase.

Authors:  D Lecerof; M Fodje; A Hansson; M Hansson; S Al-Karadaghi
Journal:  J Mol Biol       Date:  2000-03-17       Impact factor: 5.469

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  Structural characterization and formation kinetics of sitting-atop (SAT) complexes of some porphyrins with copper(II) ion in aqueous acetonitrile relevant to porphyrin metalation mechanism. Structures of aquacopper(II) and cu(II)-SAT complexes as determined by XAFS spectroscopy.

Authors:  M Inamo; N Kamiya; Y Inada; M Nomura; S Funahashi
Journal:  Inorg Chem       Date:  2001-10-22       Impact factor: 5.165

Review 5.  Classical electrostatics in biology and chemistry.

Authors:  B Honig; A Nicholls
Journal:  Science       Date:  1995-05-26       Impact factor: 47.728

6.  Metal binding to Saccharomyces cerevisiae ferrochelatase.

Authors:  Tobias Karlberg; David Lecerof; Monika Gora; Germund Silvegren; Rosine Labbe-Bois; Mats Hansson; Salam Al-Karadaghi
Journal:  Biochemistry       Date:  2002-11-19       Impact factor: 3.162

7.  Crystal structure of ferrochelatase: the terminal enzyme in heme biosynthesis.

Authors:  S Al-Karadaghi; M Hansson; S Nikonov; B Jönsson; L Hederstedt
Journal:  Structure       Date:  1997-11-15       Impact factor: 5.006

8.  Substitution of murine ferrochelatase glutamate-287 with glutamine or alanine leads to porphyrin substrate-bound variants.

Authors:  R Franco; A S Pereira; P Tavares; A Mangravita; M J Barber; I Moura; G C Ferreira
Journal:  Biochem J       Date:  2001-05-15       Impact factor: 3.857

9.  Metal inhibition of ferrochelatase.

Authors:  H A Dailey
Journal:  Ann N Y Acad Sci       Date:  1987       Impact factor: 5.691

10.  Binding of protoporphyrin IX and metal derivatives to the active site of wild-type mouse ferrochelatase at low porphyrin-to-protein ratios.

Authors:  Yi Lu; Adelaide Sousa; Ricardo Franco; Arianna Mangravita; Gloria C Ferreira; Isabel Moura; John A Shelnutt
Journal:  Biochemistry       Date:  2002-07-02       Impact factor: 3.162

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  21 in total

Review 1.  Making and breaking heme.

Authors:  Arianna I Celis; Jennifer L DuBois
Journal:  Curr Opin Struct Biol       Date:  2019-02-22       Impact factor: 6.809

2.  Chelatases: distort to select?

Authors:  Salam Al-Karadaghi; Ricardo Franco; Mats Hansson; John A Shelnutt; Grazia Isaya; Gloria C Ferreira
Journal:  Trends Biochem Sci       Date:  2006-02-15       Impact factor: 13.807

3.  Biosynthesis of the nickel-pincer nucleotide cofactor of lactate racemase requires a CTP-dependent cyclometallase.

Authors:  Benoît Desguin; Matthias Fellner; Olivier Riant; Jian Hu; Robert P Hausinger; Pascal Hols; Patrice Soumillion
Journal:  J Biol Chem       Date:  2018-06-10       Impact factor: 5.157

4.  Bacterial ferrochelatase turns human: Tyr13 determines the apparent metal specificity of Bacillus subtilis ferrochelatase.

Authors:  Mattias D Hansson; Tobias Karlberg; Christopher A G Söderberg; Sreekanth Rajan; Martin J Warren; Salam Al-Karadaghi; Stephen E J Rigby; Mats Hansson
Journal:  J Biol Inorg Chem       Date:  2010-11-04       Impact factor: 3.358

5.  Identification and characterization of solvent-filled channels in human ferrochelatase.

Authors:  Amy E Medlock; Wided Najahi-Missaoui; Teresa A Ross; Tamara A Dailey; Joseph Burch; Jessica R O'Brien; William N Lanzilotta; Harry A Dailey
Journal:  Biochemistry       Date:  2012-06-28       Impact factor: 3.162

6.  Metal ion selectivity and substrate inhibition in the metal ion chelation catalyzed by human ferrochelatase.

Authors:  Ruth E Davidson; Christopher J Chesters; James D Reid
Journal:  J Biol Chem       Date:  2009-09-19       Impact factor: 5.157

7.  Porphyrin binding and distortion and substrate specificity in the ferrochelatase reaction: the role of active site residues.

Authors:  Tobias Karlberg; Mattias D Hansson; Raymond K Yengo; Renzo Johansson; Hege O Thorvaldsen; Gloria C Ferreira; Mats Hansson; Salam Al-Karadaghi
Journal:  J Mol Biol       Date:  2008-03-28       Impact factor: 5.469

8.  Metal ion substrate inhibition of ferrochelatase.

Authors:  Gregory A Hunter; Matthew P Sampson; Gloria C Ferreira
Journal:  J Biol Chem       Date:  2008-07-01       Impact factor: 5.157

9.  A pi-helix switch selective for porphyrin deprotonation and product release in human ferrochelatase.

Authors:  Amy E Medlock; Tamara A Dailey; Teresa A Ross; Harry A Dailey; William N Lanzilotta
Journal:  J Mol Biol       Date:  2007-08-23       Impact factor: 5.469

10.  Altered orientation of active site residues in variants of human ferrochelatase. Evidence for a hydrogen bond network involved in catalysis.

Authors:  Harry A Dailey; Chia-Kuei Wu; Peter Horanyi; Amy E Medlock; Wided Najahi-Missaoui; Amy E Burden; Tamara A Dailey; John Rose
Journal:  Biochemistry       Date:  2007-06-14       Impact factor: 3.162

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