Literature DB >> 12761571

The apoptosis database.

K S Doctor1, J C Reed, A Godzik, P E Bourne.   

Abstract

The apoptosis database is a public resource for researchers and students interested in the molecular biology of apoptosis. The resource provides functional annotation, literature references, diagrams/images, and alternative nomenclatures on a set of proteins having 'apoptotic domains'. These are the distinctive domains that are often, if not exclusively, found in proteins involved in apoptosis. The initial choice of proteins to be included is defined by apoptosis experts and bioinformatics tools. Users can browse through the web accessible lists of domains, proteins containing these domains and their associated homologs. The database can also be searched by sequence homology using basic local alignment search tool, text word matches of the annotation, and identifiers for specific records. The resource is available at http://www.apoptosis-db.org and is updated on a regular basis.

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Year:  2003        PMID: 12761571     DOI: 10.1038/sj.cdd.4401230

Source DB:  PubMed          Journal:  Cell Death Differ        ISSN: 1350-9047            Impact factor:   15.828


  7 in total

1.  Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family.

Authors:  Tong Liu; Ana Rojas; Yuzhen Ye; Adam Godzik
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

Review 2.  Evolution of the animal apoptosis network.

Authors:  Christian M Zmasek; Adam Godzik
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

3.  THANATOS: an integrative data resource of proteins and post-translational modifications in the regulation of autophagy.

Authors:  Wankun Deng; Lili Ma; Ying Zhang; Jiaqi Zhou; Yongbo Wang; Zexian Liu; Yu Xue
Journal:  Autophagy       Date:  2018       Impact factor: 16.016

4.  Autophagy and Apoptosis Specific Knowledgebases-guided Systems Pharmacology Drug Research.

Authors:  Peihao Fan; Nanyi Wang; Lirong Wang
Journal:  Curr Cancer Drug Targets       Date:  2019       Impact factor: 3.428

5.  iPCD: A Comprehensive Data Resource of Regulatory Proteins in Programmed Cell Death.

Authors:  Dachao Tang; Cheng Han; Shaofeng Lin; Xiaodan Tan; Weizhi Zhang; Di Peng; Chenwei Wang; Yu Xue
Journal:  Cells       Date:  2022-06-24       Impact factor: 7.666

6.  Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases.

Authors:  Jean-Marie Ravel; L Cristobal Monraz Gomez; Nicolas Sompairac; Laurence Calzone; Boris Zhivotovsky; Guido Kroemer; Emmanuel Barillot; Andrei Zinovyev; Inna Kuperstein
Journal:  Cancers (Basel)       Date:  2020-04-17       Impact factor: 6.639

7.  Programmed genetic instability: a tumor-permissive mechanism for maintaining the evolvability of higher species through methylation-dependent mutation of DNA repair genes in the male germ line.

Authors:  Yongzhong Zhao; Richard J Epstein
Journal:  Mol Biol Evol       Date:  2008-06-04       Impact factor: 16.240

  7 in total

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