Literature DB >> 12754510

Positional cloning of a quantitative trait locus on chromosome 13q14 that influences immunoglobulin E levels and asthma.

Youming Zhang1, Nicholas I Leaves, Gavin G Anderson, Chris P Ponting, John Broxholme, Richard Holt, Pauline Edser, Sumit Bhattacharyya, Andy Dunham, Ian M Adcock, Louise Pulleyn, Peter J Barnes, John I Harper, Gonçalo Abecasis, Lon Cardon, Melanie White, John Burton, Lucy Matthews, Richard Mott, Mark Ross, Roger Cox, Miriam F Moffatt, William O C M Cookson.   

Abstract

Atopic or immunoglobulin E (IgE)-mediated diseases include the common disorders of asthma, atopic dermatitis and allergic rhinitis. Chromosome 13q14 shows consistent linkage to atopy and the total serum IgE concentration. We previously identified association between total serum IgE levels and a novel 13q14 microsatellite (USAT24G1; ref. 7) and have now localized the underlying quantitative-trait locus (QTL) in a comprehensive single-nucleotide polymorphism (SNP) map. We found replicated association to IgE levels that was attributed to several alleles in a single gene, PHF11. We also found association with these variants to severe clinical asthma. The gene product (PHF11) contains two PHD zinc fingers and probably regulates transcription. Distinctive splice variants were expressed in immune tissues and cells.

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Year:  2003        PMID: 12754510     DOI: 10.1038/ng1166

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  75 in total

1.  Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci.

Authors:  L Grapes; J C M Dekkers; M F Rothschild; R L Fernando
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

2.  A genome-wide linkage scan for bone mineral density in an extended sample: evidence for linkage on 11q23 and Xq27.

Authors:  H Shen; Y-Y Zhang; J-R Long; F-H Xu; Y-Z Liu; P Xiao; L-J Zhao; D-H Xiong; Y-J Liu; V Dvornyk; S Rocha-Sanchez; P-Y Liu; J-L Li; T Conway; K M Davies; R R Recker; H-W Deng
Journal:  J Med Genet       Date:  2004-10       Impact factor: 6.318

Review 3.  Genomewide association studies in allergy and the influence of ethnicity.

Authors:  Kathleen C Barnes
Journal:  Curr Opin Allergy Clin Immunol       Date:  2010-10

4.  Left-Right Axis Differentiation and Functional Lateralization: a Haplotype in the Methyltransferase Encoding Gene SETDB2 Might Mediate Handedness in Healthy Adults.

Authors:  Sebastian Ocklenburg; Larissa Arning; Wanda M Gerding; Jan G Hengstler; Jörg T Epplen; Onur Güntürkün; Christian Beste; Denis A Akkad
Journal:  Mol Neurobiol       Date:  2015-11-16       Impact factor: 5.590

5.  Optimal haplotype structure for linkage disequilibrium-based fine mapping of quantitative trait loci using identity by descent.

Authors:  L Grapes; M Z Firat; J C M Dekkers; M F Rothschild; R L Fernando
Journal:  Genetics       Date:  2005-12-01       Impact factor: 4.562

6.  Robust estimation of experimentwise P values applied to a genome scan of multiple asthma traits identifies a new region of significant linkage on chromosome 20q13.

Authors:  Manuel A R Ferreira; Louise O'Gorman; Peter Le Souëf; Paul R Burton; Brett G Toelle; Colin F Robertson; Peter M Visscher; Nicholas G Martin; David L Duffy
Journal:  Am J Hum Genet       Date:  2005-10-14       Impact factor: 11.025

Review 7.  Gene by environment interaction in asthma.

Authors:  Gerard H Koppelman
Journal:  Curr Allergy Asthma Rep       Date:  2006-03       Impact factor: 4.806

Review 8.  The role of novel genes in modifying airway responses in asthma.

Authors:  Hae-Sim Park; Seung-Hyun Kim; Choon-Sik Park
Journal:  Curr Allergy Asthma Rep       Date:  2006-03       Impact factor: 4.806

9.  Quantitative linkage genome scan for atopy in a large collection of Caucasian families.

Authors:  Bradley T Webb; Edwin van den Oord; Anthony Akkari; Steve Wilton; Tina Ly; Rachael Duff; Kathleen C Barnes; Karin Carlsen; Jorrit Gerritsen; Warren Lenney; Michael Silverman; Peter Sly; John Sundy; John Tsanakas; Andrea von Berg; Moira Whyte; Malcolm Blumenthal; Jorgen Vestbo; Lefkos Middleton; Peter J Helms; Wayne H Anderson; Sreekumar G Pillai
Journal:  Hum Genet       Date:  2006-11-14       Impact factor: 4.132

Review 10.  African Americans with asthma: genetic insights.

Authors:  Kathleen C Barnes; Audrey V Grant; Nadia N Hansel; Peisong Gao; Georgia M Dunston
Journal:  Proc Am Thorac Soc       Date:  2007-01
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