Literature DB >> 12748866

Validation of the X-chromosomal STR DXS6809.

J Edelmann1, D Deichsel, I Plate, M Käser, R Szibor.   

Abstract

This paper presents sequence and population genetic data of the microsatellite marker DXS6809 (GDB 365492) obtained from a German population sample ( n=725 chromosomes). DXS6809 is a highly polymorphic X-linked tetranucleotide polymorphism presenting 12 alleles in our population. Sequencing of 77 PCR products covering 12 alleles (by length), characterised DXS6809 as a marker with a complex repeat sequence structure. A polymorphism information content (PIC) of 0.825 and a mean exclusion chance (MEC) of 0.815 were obtained. A deviation from the Hardy-Weinberg equilibrium (HWE) could not be detected and male and female samples exhibited a similar allele distribution. Kinship testing revealed a typical X-linked inheritance and 2 mutations were found in 394 meioses. DXS6809 is located 90.18 Mb, i.e. 102.3 cM, from the Xp-telomere (Xp-tel), corresponding to Xq21.33. The presented data qualify DXS6809 as a useful supplement to the known forensic ChrX marker panel.

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Year:  2003        PMID: 12748866     DOI: 10.1007/s00414-003-0369-4

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  17 in total

1.  Population data on the X chromosome short tandem repeat locus HumHPRTB in two regions of Germany.

Authors:  R Szibor; S Lautsch; I Plate; N Beck
Journal:  J Forensic Sci       Date:  2000-01       Impact factor: 1.832

2.  Validation of the HumDXS6807 short tandem repeat polymorphism for forensic application.

Authors:  J Edelmann; R Szibor
Journal:  Electrophoresis       Date:  1999-10       Impact factor: 3.535

3.  DXS101: a highly polymorphic X-linked STR.

Authors:  J Edelmann; R Szibor
Journal:  Int J Legal Med       Date:  2001       Impact factor: 2.686

4.  Sequence structure and population data of two X-linked markers: DXS7423 and DXS8377.

Authors:  María T Zarrabeitia; Teresa Amigo; Carolina Sañudo; Marian Martínez de Pancorbo; José A Riancho
Journal:  Int J Legal Med       Date:  2002-12       Impact factor: 2.686

Review 5.  Use of X-linked markers for forensic purposes.

Authors:  R Szibor; M Krawczak; S Hering; J Edelmann; E Kuhlisch; D Krause
Journal:  Int J Legal Med       Date:  2003-02-15       Impact factor: 2.686

6.  Sequence variation and allele nomenclature for the X-linked STRs DXS9895, DXS8378, DXS7132, DXS6800, DXS7133, GATA172D05, DXS7423 and DXS8377.

Authors:  Jeanett Edelmann; Danilo Deichsel; Sandra Hering; Ines Plate; Reinhard Szibor
Journal:  Forensic Sci Int       Date:  2002-09-26       Impact factor: 2.395

7.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.

Authors:  B Brinkmann; M Klintschar; F Neuhuber; J Hühne; B Rolf
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

8.  Japanese population data on X-chromosomal STR locus AR.

Authors:  T Kishida; Y Tamaki
Journal:  Nihon Hoigaku Zasshi       Date:  1997-10

9.  Evaluation of Y-chromosomal STRs: a multicenter study.

Authors:  M Kayser; A Caglià; D Corach; N Fretwell; C Gehrig; G Graziosi; F Heidorn; S Herrmann; B Herzog; M Hidding; K Honda; M Jobling; M Krawczak; K Leim; S Meuser; E Meyer; W Oesterreich; A Pandya; W Parson; G Penacino; A Perez-Lezaun; A Piccinini; M Prinz; C Schmitt; L Roewer
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

Review 10.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

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  10 in total

1.  Genetic characteristics and population study of 4 X-chromosomal STRs in Koreans: evidence for a null allele at DXS9898.

Authors:  Hwan Young Lee; Myung Jin Park; Chan Kwon Jeong; Seon Yeong Lee; Ji-Eun Yoo; Ukhee Chung; Jong-Hoon Choi; Chong-Youl Kim; Kyoung-Jin Shin
Journal:  Int J Legal Med       Date:  2004-06-08       Impact factor: 2.686

2.  DXS10079, DXS10074 and DXS10075 are STRs located within a 280-kb region of Xq12 and provide stable haplotypes useful for complex kinship cases.

Authors:  Sandra Hering; Christa Augustin; Jeanett Edelmann; Micaela Heidel; Jan Dressler; Heike Rodig; Eberhard Kuhlisch; Reinhard Szibor
Journal:  Int J Legal Med       Date:  2005-12-13       Impact factor: 2.686

3.  Haplotyping of STR cluster DXS6801-DXS6809-DXS6789 on Xq21 provides a powerful tool for kinship testing.

Authors:  Reinhard Szibor; Sandra Hering; Eberhard Kuhlisch; Ines Plate; Susanne Demberger; Michael Krawczak; Jeanett Edelmann
Journal:  Int J Legal Med       Date:  2005-08-11       Impact factor: 2.686

4.  Development of a five ChX STRs loci typing system.

Authors:  Qiu-ling Liu; De-jian Lv; Xiang-lin Wu; Hong-yu Sun; Xin-yao Wu; Hui-ling Lu
Journal:  Int J Legal Med       Date:  2008-02-05       Impact factor: 2.686

5.  A GEP-ISFG collaborative study on the optimization of an X-STR decaplex: data on 15 Iberian and Latin American populations.

Authors:  Leonor Gusmão; Paula Sánchez-Diz; Cíntia Alves; Iva Gomes; María Teresa Zarrabeitia; Mariel Abovich; Ivannia Atmetlla; Cecilia Bobillo; Luisa Bravo; Juan Builes; Laura Cainé; Raquel Calvo; Elizeu Carvalho; Mónica Carvalho; Regina Cicarelli; Laura Catelli; Daniel Corach; Marta Espinoza; Oscar García; Marcelo Malaghini; Joyce Martins; Fátima Pinheiro; Maria João Porto; Eduardo Raimondi; Jose Antonio Riancho; Amelia Rodríguez; Anayanci Rodríguez; Belén Rodríguez Cardozo; Vicente Schneider; Sandra Silva; Celso Tavares; Ulises Toscanini; Carlos Vullo; Martin Whittle; Iñaki Yurrebaso; Angel Carracedo; António Amorim
Journal:  Int J Legal Med       Date:  2008-12-12       Impact factor: 2.686

6.  Haplotype analysis of two X-chromosome STR clusters in the Pakistani population.

Authors:  Muhammad Akram Tariq; Muhammad Farooq Sabir; S Amer Riazuddin; Sheikh Riazuddin
Journal:  Int J Legal Med       Date:  2008-11-15       Impact factor: 2.686

7.  Sixteen X-chromosomal STRs in two octaplex PCRs in Japanese population and development of 15-locus multiplex PCR system.

Authors:  Yasutaka Nakamura; Kiyoshi Minaguchi
Journal:  Int J Legal Med       Date:  2010-05-29       Impact factor: 2.686

8.  Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample.

Authors:  C Robino; A Giolitti; S Gino; C Torre
Journal:  Int J Legal Med       Date:  2006-07-22       Impact factor: 2.686

9.  Evaluation of DXS9902, DXS7132, DXS6809, DXS7133, and DXS7423 in humans and chimpanzees: sequence variation, repeat structure, and nomenclature.

Authors:  Iva Gomes; Rui Pereira; Wolfgang R Mayr; António Amorim; Angel Carracedo; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2009-06-18       Impact factor: 2.686

10.  Genetic diversity of 10 X chromosome STRs in northern Portugal.

Authors:  Rui Pereira; Iva Gomes; António Amorim; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2007-01-06       Impact factor: 2.791

  10 in total

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