Literature DB >> 12735111

Exploiting genome data to understand the function, regulation, and evolutionary origins of toxicologically relevant genes.

Nazzareno Ballatori1, James L Boyer, John C Rockett.   

Abstract

The wealth of new information coming from the many genome sequencing projects is providing unprecedented opportunities for major advances in all areas of biology, including the environmental health sciences. To facilitate this discovery process, experts in the fields of functional genomics and informatics and the emerging field of toxicogenomics recently gathered at the Mount Desert Island Biological Laboratory in Salisbury Cove, Maine, site of a National Institute of Environmental Health Sciences Marine and Freshwater Biomedical Science Center, to share their ideas and latest research findings. The goal of the symposium was to highlight approaches that may be used to identify and characterize toxicologically relevant genes being discovered in the genome sequencing projects. Many of the approaches rely heavily on comparative models as a way of identifying gene homology, ontology, and physiologic function, and on the availability of databases that facilitate storage, analysis, interpretation, and widespread dissemination of relevant data.

Mesh:

Year:  2003        PMID: 12735111

Source DB:  PubMed          Journal:  EHP Toxicogenomics        ISSN: 1542-4359


  7 in total

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Authors:  Paul A Dawson; Melissa L Hubbert; Anuradha Rao
Journal:  Biochim Biophys Acta       Date:  2010-06-09

2.  Analysis and functional annotation of expressed sequence tags from in vitro cell lines of elasmobranchs: Spiny dogfish shark (Squalus acanthias) and little skate (Leucoraja erinacea).

Authors:  Angela Parton; Christopher J Bayne; David W Barnes
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2010-04-24       Impact factor: 2.674

3.  Establishing primary cultures of embryonic intestinal cells from the elasmobranch, Leucoraja erinacea.

Authors:  Nicole A Theodosiou; Angela Parton
Journal:  In Vitro Cell Dev Biol Anim       Date:  2012-07-18       Impact factor: 2.416

Review 4.  Integration of molecular functions at the ecosystemic level: breakthroughs and future goals of environmental genomics and post-genomics.

Authors:  Philippe Vandenkoornhuyse; Alexis Dufresne; Achim Quaiser; Gwenola Gouesbet; Françoise Binet; André-Jean Francez; Stéphane Mahé; Myriam Bormans; Yvan Lagadeuc; Ivan Couée
Journal:  Ecol Lett       Date:  2010-04-21       Impact factor: 9.492

5.  Perspectives on validation of high-throughput assays supporting 21st century toxicity testing.

Authors:  Richard Judson; Robert Kavlock; Matthew Martin; David Reif; Keith Houck; Thomas Knudsen; Ann Richard; Raymond R Tice; Maurice Whelan; Menghang Xia; Ruili Huang; Christopher Austin; George Daston; Thomas Hartung; John R Fowle; William Wooge; Weida Tong; David Dix
Journal:  ALTEX       Date:  2013       Impact factor: 6.043

6.  Evolutionary concepts can benefit both fundamental research and applied research in toxicology (A comment on Brady et al. 2017).

Authors:  Mark E Hahn
Journal:  Evol Appl       Date:  2018-11-05       Impact factor: 5.183

7.  Marine organism cell biology and regulatory sequence discoveryin comparative functional genomics.

Authors:  David W Barnes; Carolyn J Mattingly; Angela Parton; Lori M Dowell; Christopher J Bayne; John N Forrest
Journal:  Cytotechnology       Date:  2005-11-30       Impact factor: 2.058

  7 in total

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