Literature DB >> 12728550

On the temperature--pressure free-energy landscape of proteins.

Revanur Ravindra1, Roland Winter.   

Abstract

We studied the thermodynamic stability of a small monomeric protein, staphylococcal nuclease (Snase), as a function of both temperature and pressure, and expressed it as a 3D free-energy surface on the p,T-plane using a second-order Taylor expansion of the Gibbs free-energy change delta G upon unfolding. We took advantage of a series of different techniques (small-angle X-ray scattering, Fourier-transform infrared spectroscopy, differential thermal analysis, pressure perturbation calorimetry and densitometry) in the evaluation of the conformation of the protein and in evaluating the changes in the thermodynamic parameters upon unfolding, such as the heat capacity, enthalpy, entropy, volume, isothermal compressibility and expansivity. The calculated results of the free-energy landscape of the protein are in good agreement with experimental data of the p,T-stability diagram of the protein over a temperature range from 200 to 400 K and at pressures from ambient pressure to 4000 bar. The results demonstrate that combined temperature--pressure-dependent studies can help delineate the free-energy landscape of proteins and hence help elucidate which features and thermodynamic parameters are essential in determining the stability of the native conformational state of proteins. The approach presented may also be used for studying other systems with so-called re-entrant or Tamman loop-shaped phase diagrams.

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Year:  2003        PMID: 12728550     DOI: 10.1002/cphc.200390062

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  12 in total

1.  Characterization of the temperature- and pressure-induced inverse and reentrant transition of the minimum elastin-like polypeptide GVG(VPGVG) by DSC, PPC, CD, and FT-IR spectroscopy.

Authors:  C Nicolini; R Ravindra; B Ludolph; R Winter
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

2.  Revealing conformational substates of lipidated N-Ras protein by pressure modulation.

Authors:  Shobhna Kapoor; Gemma Triola; Ingrid R Vetter; Mirko Erlkamp; Herbert Waldmann; Roland Winter
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

3.  High-pressure SAXS study of folded and unfolded ensembles of proteins.

Authors:  Martin A Schroer; Michael Paulus; Christoph Jeworrek; Christina Krywka; Saskia Schmacke; Yong Zhai; D C Florian Wieland; Christoph J Sahle; Michael Chimenti; Catherine A Royer; Bertrand Garcia-Moreno; Metin Tolan; Roland Winter
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

4.  A water-explicit lattice model of heat-, cold-, and pressure-induced protein unfolding.

Authors:  Bryan A Patel; Pablo G Debenedetti; Frank H Stillinger; Peter J Rossky
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

5.  Computing the stability diagram of the Trp-cage miniprotein.

Authors:  Dietmar Paschek; Sascha Hempel; Angel E García
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

6.  Putting the Piezolyte Hypothesis under Pressure.

Authors:  Christina M Papini; Pranav P Pandharipande; Catherine A Royer; George I Makhatadze
Journal:  Biophys J       Date:  2017-08-10       Impact factor: 4.033

7.  Understanding the role of hydrogen bonds in water dynamics and protein stability.

Authors:  Valentino Bianco; Svilen Iskrov; Giancarlo Franzese
Journal:  J Biol Phys       Date:  2011-10-01       Impact factor: 1.365

8.  The free energy landscape in translational science: how can somatic mutations result in constitutive oncogenic activation?

Authors:  Chung-Jung Tsai; Ruth Nussinov
Journal:  Phys Chem Chem Phys       Date:  2014-01-21       Impact factor: 3.676

9.  Polyubiquitin Drives the Molecular Interactions of the NF-κB Essential Modulator (NEMO) by Allosteric Regulation.

Authors:  Dragana A M Catici; James E Horne; Grace E Cooper; Christopher R Pudney
Journal:  J Biol Chem       Date:  2015-04-12       Impact factor: 5.157

10.  Simulated pressure denaturation thermodynamics of ubiquitin.

Authors:  Elizabeth A Ploetz; Paul E Smith
Journal:  Biophys Chem       Date:  2017-04-25       Impact factor: 2.352

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