Literature DB >> 12727899

Parallel evolution by gene duplication in the genomes of two unicellular fungi.

Austin L Hughes1, Robert Friedman.   

Abstract

Phylogenetic analysis of conserved gene families in fission yeast Schizosaccharomyces pombe and brewer's yeast Saccharomyces cerevisiae showed that gene duplications have occurred independently in the same families in each of these two lineages to a far greater extent than expected by chance. These species represent distinct lineages of the phylum Ascomycota that independently evolved a "yeast" life cycle with a unicellular thallus that reproduces by budding, and many of the genes that have duplicated independently in the two lineages are known to be involved in crucial aspects of this life cycle. Parallel gene duplication thus appears to have played a role in the independent origin of similar adaptations in the two species. The results indicate that using phylogenetic analysis to test for parallel gene duplication in different species may help in identifying genes responsible for similar but independently evolved adaptations.

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Year:  2003        PMID: 12727899      PMCID: PMC430932          DOI: 10.1101/gr.714603

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  38 in total

1.  The evolutionary fate and consequences of duplicate genes.

Authors:  M Lynch; J S Conery
Journal:  Science       Date:  2000-11-10       Impact factor: 47.728

2.  Gene duplication and the structure of eukaryotic genomes.

Authors:  R Friedman; A L Hughes
Journal:  Genome Res       Date:  2001-03       Impact factor: 9.043

3.  The protein kinases Rck1 and Rck2 inhibit meiosis in budding yeast.

Authors:  A Ramne; E Bilsland-Marchesan; S Erickson; P Sunnerhagen
Journal:  Mol Gen Genet       Date:  2000-03

4.  Involvement of the PP2C-like phosphatase Ptc2p in the DNA checkpoint pathways of Saccharomyces cerevisiae.

Authors:  M C Marsolier; P Roussel; C Leroy; C Mann
Journal:  Genetics       Date:  2000-04       Impact factor: 4.562

5.  The 'SUN' family: yeast SUN4/SCW3 is involved in cell septation.

Authors:  M Mouassite; N Camougrand; E Schwob; G Demaison; M Laclau; M Guérin
Journal:  Yeast       Date:  2000-07       Impact factor: 3.239

6.  Updated map of duplicated regions in the yeast genome.

Authors:  C Seoighe; K H Wolfe
Journal:  Gene       Date:  1999-09-30       Impact factor: 3.688

Review 7.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

8.  Localization of synthesis of beta1,6-glucan in Saccharomyces cerevisiae.

Authors:  R C Montijn; E Vink; W H Müller; A J Verkleij; H Van Den Ende; B Henrissat; F M Klis
Journal:  J Bacteriol       Date:  1999-12       Impact factor: 3.490

9.  A selective transport route from Golgi to late endosomes that requires the yeast GGA proteins.

Authors:  M W Black; H R Pelham
Journal:  J Cell Biol       Date:  2000-10-30       Impact factor: 10.539

Review 10.  Where does fission yeast sit on the tree of life?

Authors:  M Sipiczki
Journal:  Genome Biol       Date:  2000-08-04       Impact factor: 13.583

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  18 in total

1.  Differential loss of ancestral gene families as a source of genomic divergence in animals.

Authors:  Austin L Hughes; Robert Friedman
Journal:  Proc Biol Sci       Date:  2004-02-07       Impact factor: 5.349

2.  Shedding genomic ballast: extensive parallel loss of ancestral gene families in animals.

Authors:  Austin L Hughes; Robert Friedman
Journal:  J Mol Evol       Date:  2004-12       Impact factor: 2.395

3.  Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.

Authors:  Brad A Chapman; John E Bowers; Frank A Feltus; Andrew H Paterson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-08       Impact factor: 11.205

4.  Evolution of +1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales.

Authors:  Philip J Farabaugh; Emily Kramer; Haritha Vallabhaneni; Ana Raman
Journal:  J Mol Evol       Date:  2006-07-12       Impact factor: 2.395

5.  Transcription factor families have much higher expansion rates in plants than in animals.

Authors:  Shin-Han Shiu; Ming-Che Shih; Wen-Hsiung Li
Journal:  Plant Physiol       Date:  2005-09       Impact factor: 8.340

Review 6.  Yeast evolutionary genomics.

Authors:  Bernard Dujon
Journal:  Nat Rev Genet       Date:  2010-07       Impact factor: 53.242

7.  Evaluation of the diversity and phylogenetic implications of NAC transcription factor members of four reference species from the different embryophytic plant groups.

Authors:  Rakhi Chakraborty; Swarnendu Roy
Journal:  Physiol Mol Biol Plants       Date:  2018-07-25

8.  Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication.

Authors:  Devin R Scannell; A Carolin Frank; Gavin C Conant; Kevin P Byrne; Megan Woolfit; Kenneth H Wolfe
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

9.  Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli.

Authors:  Kousuke Hanada; Cheng Zou; Melissa D Lehti-Shiu; Kazuo Shinozaki; Shin-Han Shiu
Journal:  Plant Physiol       Date:  2008-08-20       Impact factor: 8.340

10.  Gene duplication and the properties of biological networks.

Authors:  Austin L Hughes; Robert Friedman
Journal:  J Mol Evol       Date:  2005-11-02       Impact factor: 2.395

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