Literature DB >> 12727861

Crawling into a new era-the Dictyostelium genome project.

Ludwig Eichinger1, Angelika A Noegel.   

Abstract

The social amoeba Dictyostelium discoideum is a well-established model organism for the study of basic aspects of differentiation, signal transduction, phagocytosis, cytokinesis and cell motility. Its genome is being sequenced by an international consortium using a whole chromosome shotgun approach. The pacemaker of the D.discoideum genome project has been chromosome 2, the largest chromosome, which at 8 Mb represents approximately 25% of the genome and whose sequence and analysis have been published recently. Chromosomes 1 and 6 are close to being finished. To accelerate completion of the genome sequence, the next step in the project will be a whole-genome assembly followed by the analysis of the complete gene content. The completed genome sequence and its analysis provide the basis for genome-wide functional studies. It will position Dictyostelium at the same level as other model organisms and further enhance its experimental attractiveness.

Entities:  

Mesh:

Year:  2003        PMID: 12727861      PMCID: PMC156086          DOI: 10.1093/emboj/cdg214

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  31 in total

1.  Rooting the eukaryote tree by using a derived gene fusion.

Authors:  Alexandra Stechmann; Thomas Cavalier-Smith
Journal:  Science       Date:  2002-07-05       Impact factor: 47.728

2.  Electrophoretic karyotype for Dictyostelium discoideum.

Authors:  E C Cox; C D Vocke; S Walter; K Y Gregg; E S Bain
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

Review 3.  Chemotaxis in eukaryotic cells: a focus on leukocytes and Dictyostelium.

Authors:  P N Devreotes; S H Zigmond
Journal:  Annu Rev Cell Biol       Date:  1988

4.  Various bacterial pathogens and symbionts infect the amoeba Dictyostelium discoideum.

Authors:  Carina Skriwan; Marcela Fajardo; Sonja Hägele; Matthias Horn; Michael Wagner; Rolf Michel; Georg Krohne; Michael Schleicher; Jörg Hacker; Michael Steinert
Journal:  Int J Med Microbiol       Date:  2002-03       Impact factor: 3.473

5.  Evolutionary analyses of ABC transporters of Dictyostelium discoideum.

Authors:  Christophe Anjard; William F Loomis
Journal:  Eukaryot Cell       Date:  2002-08

6.  A common mechanism of action for three mood-stabilizing drugs.

Authors:  Robin S B Williams; Lili Cheng; Anne W Mudge; Adrian J Harwood
Journal:  Nature       Date:  2002-05-16       Impact factor: 49.962

7.  The genome sequence of Schizosaccharomyces pombe.

Authors:  V Wood; R Gwilliam; M-A Rajandream; M Lyne; R Lyne; A Stewart; J Sgouros; N Peat; J Hayles; S Baker; D Basham; S Bowman; K Brooks; D Brown; S Brown; T Chillingworth; C Churcher; M Collins; R Connor; A Cronin; P Davis; T Feltwell; A Fraser; S Gentles; A Goble; N Hamlin; D Harris; J Hidalgo; G Hodgson; S Holroyd; T Hornsby; S Howarth; E J Huckle; S Hunt; K Jagels; K James; L Jones; M Jones; S Leather; S McDonald; J McLean; P Mooney; S Moule; K Mungall; L Murphy; D Niblett; C Odell; K Oliver; S O'Neil; D Pearson; M A Quail; E Rabbinowitsch; K Rutherford; S Rutter; D Saunders; K Seeger; S Sharp; J Skelton; M Simmonds; R Squares; S Squares; K Stevens; K Taylor; R G Taylor; A Tivey; S Walsh; T Warren; S Whitehead; J Woodward; G Volckaert; R Aert; J Robben; B Grymonprez; I Weltjens; E Vanstreels; M Rieger; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; A Düsterhöft; C Fritzc; E Holzer; D Moestl; H Hilbert; K Borzym; I Langer; A Beck; H Lehrach; R Reinhardt; T M Pohl; P Eger; W Zimmermann; H Wedler; R Wambutt; B Purnelle; A Goffeau; E Cadieu; S Dréano; S Gloux; V Lelaure; S Mottier; F Galibert; S J Aves; Z Xiang; C Hunt; K Moore; S M Hurst; M Lucas; M Rochet; C Gaillardin; V A Tallada; A Garzon; G Thode; R R Daga; L Cruzado; J Jimenez; M Sánchez; F del Rey; J Benito; A Domínguez; J L Revuelta; S Moreno; J Armstrong; S L Forsburg; L Cerutti; T Lowe; W R McCombie; I Paulsen; J Potashkin; G V Shpakovski; D Ussery; B G Barrell; P Nurse; L Cerrutti
Journal:  Nature       Date:  2002-02-21       Impact factor: 49.962

8.  Sequence and analysis of chromosome 2 of Dictyostelium discoideum.

Authors:  Gernot Glöckner; Ludwig Eichinger; Karol Szafranski; Justin A Pachebat; Alan T Bankier; Paul H Dear; Rüdiger Lehmann; Cornelia Baumgart; Genís Parra; Josep F Abril; Roderic Guigó; Kai Kumpf; Budi Tunggal; Edward Cox; Michael A Quail; Matthias Platzer; André Rosenthal; Angelika A Noegel
Journal:  Nature       Date:  2002-07-04       Impact factor: 49.962

9.  Genome sequence of the human malaria parasite Plasmodium falciparum.

Authors:  Malcolm J Gardner; Neil Hall; Eula Fung; Owen White; Matthew Berriman; Richard W Hyman; Jane M Carlton; Arnab Pain; Karen E Nelson; Sharen Bowman; Ian T Paulsen; Keith James; Jonathan A Eisen; Kim Rutherford; Steven L Salzberg; Alister Craig; Sue Kyes; Man-Suen Chan; Vishvanath Nene; Shamira J Shallom; Bernard Suh; Jeremy Peterson; Sam Angiuoli; Mihaela Pertea; Jonathan Allen; Jeremy Selengut; Daniel Haft; Michael W Mather; Akhil B Vaidya; David M A Martin; Alan H Fairlamb; Martin J Fraunholz; David S Roos; Stuart A Ralph; Geoffrey I McFadden; Leda M Cummings; G Mani Subramanian; Chris Mungall; J Craig Venter; Daniel J Carucci; Stephen L Hoffman; Chris Newbold; Ronald W Davis; Claire M Fraser; Bart Barrell
Journal:  Nature       Date:  2002-10-03       Impact factor: 49.962

10.  A transcriptional profile of multicellular development in Dictyostelium discoideum.

Authors:  Nancy Van Driessche; Chad Shaw; Mariko Katoh; Takahiro Morio; Richard Sucgang; Miroslava Ibarra; Hidekazu Kuwayama; Tamao Saito; Hideko Urushihara; Mineko Maeda; Ikuo Takeuchi; Hiroshi Ochiai; William Eaton; Jeffrey Tollett; John Halter; Adam Kuspa; Yoshimasa Tanaka; Gad Shaulsky
Journal:  Development       Date:  2002-04       Impact factor: 6.868

View more
  12 in total

1.  Phg2, a kinase involved in adhesion and focal site modeling in Dictyostelium.

Authors:  Leigh Gebbie; Mohammed Benghezal; Sophie Cornillon; Romain Froquet; Nathalie Cherix; Marilyne Malbouyres; Yaya Lefkir; Christophe Grangeasse; Sébastien Fache; Jérémie Dalous; Franz Brückert; François Letourneur; Pierre Cosson
Journal:  Mol Biol Cell       Date:  2004-06-11       Impact factor: 4.138

2.  Identification and characterization of a novel alpha-kinase with a von Willebrand factor A-like motif localized to the contractile vacuole and Golgi complex in Dictyostelium discoideum.

Authors:  Venkaiah Betapudi; Cynthia Mason; Lucila Licate; Thomas T Egelhoff
Journal:  Mol Biol Cell       Date:  2005-02-23       Impact factor: 4.138

3.  Reevaluation of the predicted gene structure of Dictyostelium cystatin A3 (cpiC) by nucleotide sequence determination of its cDNA* and its phylogenetic position in the cystatin superfamily.

Authors:  Medhat S El-Halawany; Hideki Shibata; Kiyotaka Hitomi; Masatoshi Maki
Journal:  Mol Biol Rep       Date:  2005-12       Impact factor: 2.316

4.  Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium.

Authors:  Gue Su Chang; Angelika A Noegel; Travis N Mavrich; Rolf Müller; Lynn Tomsho; Elissa Ward; Marius Felder; Cizhong Jiang; Ludwig Eichinger; Gernot Glöckner; Stephan C Schuster; B Franklin Pugh
Journal:  Genome Res       Date:  2012-03-20       Impact factor: 9.043

5.  Phylogenetic analysis of mitochondrial outer membrane β-barrel channels.

Authors:  Małgorzata Wojtkowska; Marcin Jąkalski; Joanna R Pieńkowska; Olgierd Stobienia; Andonis Karachitos; Teresa M Przytycka; January Weiner; Hanna Kmita; Wojciech Makałowski
Journal:  Genome Biol Evol       Date:  2011-12-08       Impact factor: 3.416

6.  Adenylyl cyclase mRNA localizes to the posterior of polarized DICTYOSTELIUM cells during chemotaxis.

Authors:  Satarupa Das; Joshua M Parker; Can Guven; Weiye Wang; Paul W Kriebel; Wolfgang Losert; Daniel R Larson; Carole A Parent
Journal:  BMC Cell Biol       Date:  2017-05-25       Impact factor: 4.241

7.  Horizontal transfer of bacterial polyphosphate kinases to eukaryotes: implications for the ice age and land colonisation.

Authors:  Michael P Whitehead; Paul Hooley; Michael R W Brown
Journal:  BMC Res Notes       Date:  2013-06-05

8.  The XMAP215-family protein DdCP224 is required for cortical interactions of microtubules.

Authors:  Andrea Hestermann; Ralph Gräf
Journal:  BMC Cell Biol       Date:  2004-06-08       Impact factor: 4.241

9.  Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins.

Authors:  Martin Kollmar; Gernot Glöckner
Journal:  BMC Genomics       Date:  2003-11-27       Impact factor: 3.969

10.  Emergence of microbial networks as response to hostile environments.

Authors:  Dario Madeo; Luis R Comolli; Chiara Mocenni
Journal:  Front Microbiol       Date:  2014-08-19       Impact factor: 5.640

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.