Literature DB >> 12717728

Comments on selected aspects of nucleic acid electrostatics.

Gerald S Manning1.   

Abstract

Recent experimental, theoretical, and computational developments in the field of nucleic acid electrostatics have brought interesting concepts to the fore. The phosphate charge on the double helix apparently influences its structure. When the charge is neutralized asymmetrically, the resulting force imbalance drives bending toward the neutralized side. When the charge is uniformly neutralized, the force imbalance acts to buckle the helical axis, resulting in a compact tertiary conformation. Sharing of condensed counterions by single strands is a stabilizing factor for formation of the double helix. Sharing of condensed counterions by two double helices causes clustering of DNA and may be a factor in RNA folding. Support for these statements is reviewed. Copyright 2003 Wiley Periodicals, Inc.

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Year:  2003        PMID: 12717728     DOI: 10.1002/bip.10361

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  9 in total

1.  Multiscale study of counterion-induced attraction and bundle formation of F-actin using an Ising-like mean-field model.

Authors:  Xueping Yu; A E Carlsson
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Heat capacity changes in RNA folding: application of perturbation theory to hammerhead ribozyme cold denaturation.

Authors:  Peter J Mikulecky; Andrew L Feig
Journal:  Nucleic Acids Res       Date:  2004-07-28       Impact factor: 16.971

3.  Kinetics of filament bundling with attractive interactions.

Authors:  Xueping Yu; A E Carlsson
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

4.  Charge density of divalent metal cations determines RNA stability.

Authors:  Eda Koculi; Changbong Hyeon; D Thirumalai; Sarah A Woodson
Journal:  J Am Chem Soc       Date:  2007-02-13       Impact factor: 15.419

5.  The persistence length of DNA is reached from the persistence length of its null isomer through an internal electrostatic stretching force.

Authors:  Gerald S Manning
Journal:  Biophys J       Date:  2006-08-25       Impact factor: 4.033

6.  Ion-mediated nucleic acid helix-helix interactions.

Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

7.  Metal ion dependence of cooperative collapse transitions in RNA.

Authors:  Sarvin Moghaddam; Gokhan Caliskan; Seema Chauhan; Changbong Hyeon; R M Briber; D Thirumalai; Sarah A Woodson
Journal:  J Mol Biol       Date:  2009-08-25       Impact factor: 5.469

8.  DNA A-tracts are not curved in solutions containing high concentrations of monovalent cations.

Authors:  Earle Stellwagen; Justin P Peters; L James Maher; Nancy C Stellwagen
Journal:  Biochemistry       Date:  2013-06-06       Impact factor: 3.162

9.  A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.

Authors:  Feng Wang; Feng Li; Manjori Ganguly; Luis A Marky; Barry Gold; Martin Egli; Michael P Stone
Journal:  Biochemistry       Date:  2008-06-13       Impact factor: 3.162

  9 in total

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