Literature DB >> 12717027

The catalytic mechanism of galactose mutarotase.

James B Thoden1, Jungwook Kim, Frank M Raushel, Hazel M Holden.   

Abstract

Galactose mutarotase catalyzes the first step in normal galactose metabolism by catalyzing the conversion of beta-D-galactose to alpha-D-galactose. The structure of the enzyme from Lactococcus lactis was recently solved in this laboratory and shown to be topologically similar to domain 5 of beta-galactosidase. From this initial X-ray analysis, four amino acid residues were demonstrated to be intimately involved in sugar binding to the protein: His 96, His 170, Asp 243, and Glu 304. Here we present a combined X-ray crystallographic and kinetic analysis designed to examine the role of these residues in the reaction mechanism of the enzyme. For this investigation, the following site-directed mutant proteins were prepared: H96N, H170N, D243N, D243A, E304Q, and E304A. All of the structures of these proteins, complexed with either glucose or galactose, were solved to a nominal resolution of 1.95 A or better, and their kinetic parameters were measured against D-galactose, D-glucose, L-arabinose, or D-xylose. From these studies, it can be concluded that Glu 304 and His 170 are critical for catalysis and that His 96 and Asp 243 are important for proper substrate positioning within the active site. Specifically, Glu 304 serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and His 170 functions as the active site acid to protonate the C-5 ring oxygen.

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Year:  2003        PMID: 12717027      PMCID: PMC2323875          DOI: 10.1110/ps.0243203

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  9 in total

1.  High resolution X-ray structure of galactose mutarotase from Lactococcus lactis.

Authors:  James B Thoden; Hazel M Holden
Journal:  J Biol Chem       Date:  2002-03-20       Impact factor: 5.157

2.  Structural basis of hyaluronan degradation by Streptococcus pneumoniae hyaluronate lyase.

Authors:  S Li; S J Kelly; E Lamani; M Ferraroni; M J Jedrzejas
Journal:  EMBO J       Date:  2000-03-15       Impact factor: 11.598

3.  Crystal structure of chondroitin AC lyase, a representative of a family of glycosaminoglycan degrading enzymes.

Authors:  J Féthière; B Eggimann; M Cygler
Journal:  J Mol Biol       Date:  1999-05-14       Impact factor: 5.469

4.  Crystal structure of maltose phosphorylase from Lactobacillus brevis: unexpected evolutionary relationship with glucoamylases.

Authors:  M P Egloff; J Uppenberg; L Haalck; H van Tilbeurgh
Journal:  Structure       Date:  2001-08       Impact factor: 5.006

5.  Dependence of lactose metabolism upon mutarotase encoded in the gal operon in Escherichia coli.

Authors:  G G Bouffard; K E Rudd; S L Adhya
Journal:  J Mol Biol       Date:  1994-12-02       Impact factor: 5.469

6.  Galactose mutarotase: purification, characterization, and investigations of two important histidine residues.

Authors:  J A Beebe; P A Frey
Journal:  Biochemistry       Date:  1998-10-20       Impact factor: 3.162

7.  Crystal structure of a quinoenzyme: copper amine oxidase of Escherichia coli at 2 A resolution.

Authors:  M R Parsons; M A Convery; C M Wilmot; K D Yadav; V Blakeley; A S Corner; S E Phillips; M J McPherson; P F Knowles
Journal:  Structure       Date:  1995-11-15       Impact factor: 5.006

8.  Structural and kinetic studies of sugar binding to galactose mutarotase from Lactococcus lactis.

Authors:  James B Thoden; Jungwook Kim; Frank M Raushel; Hazel M Holden
Journal:  J Biol Chem       Date:  2002-09-05       Impact factor: 5.157

9.  Three-dimensional structure of beta-galactosidase from E. coli.

Authors:  R H Jacobson; X J Zhang; R F DuBose; B W Matthews
Journal:  Nature       Date:  1994-06-30       Impact factor: 49.962

  9 in total
  8 in total

1.  A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes.

Authors:  Sichun Yang; Sanghyun Park; Lee Makowski; Benoît Roux
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

2.  Therapeutic Monosaccharides: Looking Back, Moving Forward.

Authors:  Paulina Sosicka; Bobby G Ng; Hudson H Freeze
Journal:  Biochemistry       Date:  2019-08-22       Impact factor: 3.162

3.  Crystallization and preliminary X-ray diffraction analysis of the putative aldose 1-epimerase YeaD from Escherichia coli.

Authors:  Weijie You; Xiaoting Qiu; Yujie Zhang; Jinming Ma; Yongxiang Gao; Xiao Zhang; Liwen Niu; Maikun Teng
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-07-29

4.  Deciphering the function of an ORF: Salmonella enterica DeoM protein is a new mutarotase specific for deoxyribose.

Authors:  Liliane Assairi; Thomas Bertrand; Joëlle Ferdinand; Neli Slavova-Azmanova; Mette Christensen; Pierre Briozzo; Francis Schaeffer; Constantin T Craescu; Jan Neuhard; Octavian Bârzu; Anne-Marie Gilles
Journal:  Protein Sci       Date:  2004-04-09       Impact factor: 6.725

5.  RhaU of Rhizobium leguminosarum is a rhamnose mutarotase.

Authors:  Jason S Richardson; Xavi Carpena; Jack Switala; Rosa Perez-Luque; Lynda J Donald; Peter C Loewen; Ivan J Oresnik
Journal:  J Bacteriol       Date:  2007-12-21       Impact factor: 3.490

6.  Structural insights into the epimerization of β-1,4-linked oligosaccharides catalyzed by cellobiose 2-epimerase, the sole enzyme epimerizing non-anomeric hydroxyl groups of unmodified sugars.

Authors:  Takaaki Fujiwara; Wataru Saburi; Hirokazu Matsui; Haruhide Mori; Min Yao
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

7.  KdgF, the missing link in the microbial metabolism of uronate sugars from pectin and alginate.

Authors:  Joanne K Hobbs; Seunghyae M Lee; Melissa Robb; Fraser Hof; Christopher Barr; Kento T Abe; Jan-Hendrik Hehemann; Richard McLean; D Wade Abbott; Alisdair B Boraston
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-16       Impact factor: 11.205

8.  Induction of the galactose enzymes in Escherichia coli is independent of the C-1-hydroxyl optical configuration of the inducer D-galactose.

Authors:  Sang Jun Lee; Dale E A Lewis; Sankar Adhya
Journal:  J Bacteriol       Date:  2008-10-17       Impact factor: 3.490

  8 in total

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