Literature DB >> 12702811

The effect of a single, temperature-sensitive mutation on global gene expression in Escherichia coli.

Yong Li1, Kyle Cole, Sidney Altman.   

Abstract

High-density DNA microarrays have been used to explore the genomic profiling of gene expression of a defective Escherichia coli strain with a temperature-sensitive mutation in the protein component of RNase P. A novel gene cluster was discovered in which two of the genes are known substrates of RNase P. The expression pattern of essential genes and gene discovery from intergenic regions, for which other new transcripts are found, are also discussed.

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Year:  2003        PMID: 12702811      PMCID: PMC1370418          DOI: 10.1261/rna.2198203

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  22 in total

1.  Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein.

Authors:  She-pin Hung; Pierre Baldi; G Wesley Hatfield
Journal:  J Biol Chem       Date:  2002-07-18       Impact factor: 5.157

2.  DNA microarray analysis of fim mutations in Escherichia coli.

Authors:  M A Schembri; D W Ussery; C Workman; H Hasman; P Klemm
Journal:  Mol Genet Genomics       Date:  2002-06-21       Impact factor: 3.291

3.  Differential effects of mutations in the protein and RNA moieties of RNase P on the efficiency of suppression by various tRNA suppressors.

Authors:  L A Kirsebom; M F Baer; S Altman
Journal:  J Mol Biol       Date:  1988-12-20       Impact factor: 5.469

4.  The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.

Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

5.  Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis.

Authors:  Travis H Tani; Arkady Khodursky; Robert M Blumenthal; Patrick O Brown; Rowena G Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-08       Impact factor: 11.205

6.  Genome-wide expression profiling in Escherichia coli K-12.

Authors:  C S Richmond; J D Glasner; R Mau; H Jin; F R Blattner
Journal:  Nucleic Acids Res       Date:  1999-10-01       Impact factor: 16.971

7.  LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli.

Authors:  D Lehnen; C Blumer; T Polen; B Wackwitz; V F Wendisch; G Unden
Journal:  Mol Microbiol       Date:  2002-07       Impact factor: 3.501

8.  Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays.

Authors:  Brian Tjaden; Rini Mukherjee Saxena; Sergey Stolyar; David R Haynor; Eugene Kolker; Carsten Rosenow
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

9.  Mutants of Escherichia coli thermosensitive for the synthesis of transfer RNA.

Authors:  P Schedl; P Primakoff
Journal:  Proc Natl Acad Sci U S A       Date:  1973-07       Impact factor: 11.205

10.  Characterization in vitro of the defect in a temperature-sensitive mutant of the protein subunit of RNase P from Escherichia coli.

Authors:  M F Baer; D Wesolowski; S Altman
Journal:  J Bacteriol       Date:  1989-12       Impact factor: 3.490

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  19 in total

1.  A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs.

Authors:  Yong Li; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-29       Impact factor: 11.205

2.  Essential is not irreplaceable: fitness dynamics of experimental E. coli RNase P RNA heterologous replacement.

Authors:  Jasmine L Loveland; Jocelyn Rice; Paula C G Turrini; Michelle Lizotte-Waniewski; Robert L Dorit
Journal:  J Mol Evol       Date:  2014-09-30       Impact factor: 2.395

3.  Role of Indole Production on Virulence of Vibrio cholerae Using Galleria mellonella Larvae Model.

Authors:  Taiyeebah Nuidate; Natta Tansila; Suwat Saengkerdsub; Jetnaphang Kongreung; Dhamodharan Bakkiyaraj; Varaporn Vuddhakul
Journal:  Indian J Microbiol       Date:  2016-05-06       Impact factor: 2.461

4.  Analysis of RNase P protein (rnpA) expression in Bacillus subtilis utilizing strains with suppressible rnpA expression.

Authors:  Markus Gössringer; Rosel Kretschmer-Kazemi Far; Roland K Hartmann
Journal:  J Bacteriol       Date:  2006-10       Impact factor: 3.490

5.  Environmental factors affecting indole production in Escherichia coli.

Authors:  Thi Hiep Han; Jin-Hyung Lee; Moo Hwan Cho; Thomas K Wood; Jintae Lee
Journal:  Res Microbiol       Date:  2010-12-08       Impact factor: 3.992

6.  The precursor tRNA 3'-CCA interaction with Escherichia coli RNase P RNA is essential for catalysis by RNase P in vivo.

Authors:  Barbara Wegscheid; Roland K Hartmann
Journal:  RNA       Date:  2006-10-24       Impact factor: 4.942

Review 7.  Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects.

Authors:  Lien B Lai; Agustín Vioque; Leif A Kirsebom; Venkat Gopalan
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

Review 8.  RNase P: increased versatility through protein complexity?

Authors:  Michael C Marvin; David R Engelke
Journal:  RNA Biol       Date:  2009-01-03       Impact factor: 4.652

9.  Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs.

Authors:  Maki Inada; Christine Guthrie
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-02       Impact factor: 11.205

10.  Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs.

Authors:  Daniel J Coughlin; Jeffrey A Pleiss; Scott C Walker; Gregg B Whitworth; David R Engelke
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-19       Impact factor: 11.205

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