Literature DB >> 12694727

A logarithmic approximation to initial rates of enzyme reactions.

Wei-Ping Lu1, Lin Fei.   

Abstract

A straightforward and empirical regression method based on a logarithmic approximation has been developed to accurately estimate initial rates from nonlinear progress curves of enzyme reactions. The principle of this parametric approach is to use a relatively large number of observations, while averaging out random errors, to predict the curvature at time zero, which has the highest rate of change. The usual linear regression of a few initial time points lacks prediction power at time zero and therefore underestimates the true initial rate. Application of this nonlinear regression approach to enzyme reactions demonstrated satisfactory results. This approach is less subjective in choosing initial time points to be used for rate determination, and much more robust to random errors. Moreover, it is relatively easy to realize with commonly available software.

Mesh:

Substances:

Year:  2003        PMID: 12694727     DOI: 10.1016/s0003-2697(03)00034-4

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  10 in total

1.  Occlusion of anion-binding exosite 2 in meizothrombin explains its impaired ability to activate factor V.

Authors:  Harlan N Bradford; Sriram Krishnaswamy
Journal:  J Biol Chem       Date:  2018-12-21       Impact factor: 5.157

2.  Indole peroxygenase activity of indoleamine 2,3-dioxygenase.

Authors:  Hsin H Kuo; A Grant Mauk
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-13       Impact factor: 11.205

3.  Inorganic phosphate blocks binding of pre-miRNA to Dicer-2 via its PAZ domain.

Authors:  Ryuya Fukunaga; Cansu Colpan; Bo W Han; Phillip D Zamore
Journal:  EMBO J       Date:  2014-01-31       Impact factor: 11.598

4.  Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease.

Authors:  Elif Sarinay Cenik; Ryuya Fukunaga; Gang Lu; Robert Dutcher; Yeming Wang; Traci M Tanaka Hall; Phillip D Zamore
Journal:  Mol Cell       Date:  2011-03-17       Impact factor: 17.970

5.  Loquacious-PD removes phosphate inhibition of Dicer-2 processing of hairpin RNAs into siRNAs.

Authors:  Ryuya Fukunaga
Journal:  Biochem Biophys Res Commun       Date:  2018-03-16       Impact factor: 3.575

6.  Regulated cleavage of prothrombin by prothrombinase: repositioning a cleavage site reveals the unique kinetic behavior of the action of prothrombinase on its compound substrate.

Authors:  Harlan N Bradford; Joseph A Micucci; Sriram Krishnaswamy
Journal:  J Biol Chem       Date:  2009-10-26       Impact factor: 5.157

7.  Membrane binding by prothrombin mediates its constrained presentation to prothrombinase for cleavage.

Authors:  Harlan N Bradford; Steven J Orcutt; Sriram Krishnaswamy
Journal:  J Biol Chem       Date:  2013-08-12       Impact factor: 5.157

8.  Integration of kinetic analysis of reaction curve with a proper classical approach for enzymatic analysis.

Authors:  Xiaolan Yang; Gaobo Long; Hairong Jiang; Pu Liao; Fei Liao
Journal:  ScientificWorldJournal       Date:  2012-05-03

9.  Small methyltransferase RlmH assembles a composite active site to methylate a ribosomal pseudouridine.

Authors:  Cha San Koh; Rohini Madireddy; Timothy J Beane; Phillip D Zamore; Andrei A Korostelev
Journal:  Sci Rep       Date:  2017-04-20       Impact factor: 4.379

10.  ICEKAT: an interactive online tool for calculating initial rates from continuous enzyme kinetic traces.

Authors:  Michael D Olp; Kelsey S Kalous; Brian C Smith
Journal:  BMC Bioinformatics       Date:  2020-05-14       Impact factor: 3.169

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.