Literature DB >> 12691994

Perfect phylogeny haplotyper: haplotype inferral using a tree model.

Ren Hua Chung1, Dan Gusfield.   

Abstract

SUMMARY: We have developed an efficient program, the Perfect Phylogeny Haplotyper (PPH) that takes in unphased population genotype data, and determines if that data can be explained by haplotype pairs that could have evolved on a perfect phylogeny.

Mesh：

Year:  2003        PMID： 12691994     DOI： 10.1093/bioinformatics/btg078

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

Review 1.  Comparative genomics: methods and applications.

Authors:  Bernhard Haubold; Thomas Wiehe
Journal:  Naturwissenschaften       Date:  2004-06-25

2.  Understanding the accuracy of statistical haplotype inference with sequence data of known phase.

Authors:  Aida M Andrés; Andrew G Clark; Lawrence Shimmin; Eric Boerwinkle; Charles F Sing; James E Hixson
Journal:  Genet Epidemiol       Date:  2007-11       Impact factor: 2.135

3.  Genome-wide compatible SNP intervals and their properties.

Authors:  Jeremy Wang; Fernando Pardo-Manual de Villena; Kyle J Moore; Wei Wang; Qi Zhang; Leonard McMillan
Journal:  ACM Int Conf Bioinform Comput Biol (2010)       Date:  2010-08

Review 4.  A comprehensive literature review of haplotyping software and methods for use with unrelated individuals.

Authors:  Rany M Salem; Jennifer Wessel; Nicholas J Schork
Journal:  Hum Genomics       Date:  2005-03       Impact factor: 4.639

5.  WinHAP: an efficient haplotype phasing algorithm based on scalable sliding windows.

Authors:  Yun Xu; Wenhua Cheng; Pengyu Nie; Fengfeng Zhou
Journal:  PLoS One       Date:  2012-08-14       Impact factor: 3.240

6.  WinHAP2: an extremely fast haplotype phasing program for long genotype sequences.

Authors:  Weihua Pan; Yanan Zhao; Yun Xu; Fengfeng Zhou
Journal:  BMC Bioinformatics       Date:  2014-05-30       Impact factor: 3.169
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.