Literature DB >> 12670203

Helix macrodipole control of beta 3 peptide 14-helix stability in water.

Scott A Hart1, Adilah B F Bahadoor, Erin E Matthews, Xiaoyan J Qiu, Alanna Schepartz.   

Abstract

beta-Peptides have attracted considerable attention by virtue of their ability to populate helical secondary structures in methanol, even in the absence of stabilizing tertiary interactions. Recent efforts in beta-peptide design have produced few beta3-peptides that form stable 14-helices in water; those that do require stabilizing intramolecular salt bridges on two of three helical faces and therefore possess limited utility as tools in biological research. Here we show that favorable interactions with the 14-helix macrodipole significantly stabilize the 14-helix in water, alleviating the need for multiple salt bridges on two of three helical faces. We also report the previously unrecognized stabilization of 14-helix structure by gamma-branched beta3-amino acids. The most structured molecules we describe are highly heterogeneous at the primary sequence level, containing seven different beta3-amino acids within an 11-residue sequence. These results represent the essential first step toward the design of well-folded 14-helices that explore the interactions between beta3-peptides and biological macromolecules in vitro and in vivo.

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Year:  2003        PMID: 12670203     DOI: 10.1021/ja029868a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  beta-Peptides as inhibitors of protein-protein interactions.

Authors:  Joshua A Kritzer; Olen M Stephens; Danielle A Guarracino; Samuel K Reznik; Alanna Schepartz
Journal:  Bioorg Med Chem       Date:  2005-01-03       Impact factor: 3.641

2.  Solution structure of a beta-peptide ligand for hDM2.

Authors:  Joshua A Kritzer; Michael E Hodsdon; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2005-03-30       Impact factor: 15.419

3.  Development of small molecules designed to modulate protein-protein interactions.

Authors:  Ye Che; Bernard R Brooks; Garland R Marshall
Journal:  J Comput Aided Mol Des       Date:  2006-04-19       Impact factor: 3.686

4.  Toward beta-amino acid proteins: a cooperatively folded beta-peptide quaternary structure.

Authors:  Jade X Qiu; E James Petersson; Erin E Matthews; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2006-09-06       Impact factor: 15.419

Review 5.  Foldamers as versatile frameworks for the design and evolution of function.

Authors:  Catherine M Goodman; Sungwook Choi; Scott Shandler; William F DeGrado
Journal:  Nat Chem Biol       Date:  2007-05       Impact factor: 15.040

6.  High-resolution structure of a beta-peptide bundle.

Authors:  Douglas S Daniels; E James Petersson; Jade X Qiu; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2007-02-14       Impact factor: 15.419

7.  Beta-peptides with improved affinity for hDM2 and hDMX.

Authors:  Elizabeth A Harker; Douglas S Daniels; Danielle A Guarracino; Alanna Schepartz
Journal:  Bioorg Med Chem       Date:  2009-01-23       Impact factor: 3.641

8.  Mechanical stability of helical beta-peptides and a comparison of explicit and implicit solvent models.

Authors:  Clark A Miller; Samuel H Gellman; Nicholas L Abbott; Juan J de Pablo
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

9.  Biophysical and structural characterization of a robust octameric beta-peptide bundle.

Authors:  Jessica L Goodman; E James Petersson; Douglas S Daniels; Jade X Qiu; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2007-11-07       Impact factor: 15.419

10.  Peptide, Peptidomimetic, and Small-molecule Antagonists of the p53-HDM2 Protein-Protein Interaction.

Authors:  Peter M Fischer
Journal:  Int J Pept Res Ther       Date:  2006-03-15       Impact factor: 1.931

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