Literature DB >> 12667872

Gene enrichment in plant genomic shotgun libraries.

Pablo D Rabinowicz1, W Richard McCombie, Robert A Martienssen.   

Abstract

The Arabidopsis genome (about 130 Mbp) has been completely sequenced; whereas a draft sequence of the rice genome (about 430 Mbp) is now available and the sequencing of this genome will be completed in the near future. The much larger genomes of several important crop species, such as wheat (about 16,000 Mbp) or maize (about 2500 Mbp), may not be fully sequenced with current technology. Instead, sequencing-analysis strategies are being developed to obtain sequencing and mapping information selectively for the genic fraction (gene space) of complex plant genomes.

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Year:  2003        PMID： 12667872     DOI： 10.1016/s1369-5266(03)00008-6

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN： 1369-5266            Impact factor:   7.834


  12 in total

1.  Genes and transposons are differentially methylated in plants, but not in mammals.

Authors:  Pablo D Rabinowicz; Lance E Palmer; Bruce P May; Michael T Hemann; Scott W Lowe; W Richard McCombie; Robert A Martienssen
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

2.  Structure and expression of maize phytochrome family homeologs.

Authors:  Moira J Sheehan; Phyllis R Farmer; Thomas P Brutnell
Journal:  Genetics       Date:  2004-07       Impact factor: 4.562

Review 3.  Molecular markers from the transcribed/expressed region of the genome in higher plants.

Authors:  P K Gupta; S Rustgi
Journal:  Funct Integr Genomics       Date:  2004-04-17       Impact factor: 3.410

4.  Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome.

Authors:  R K Varshney; I Grosse; U Hähnel; R Siefken; M Prasad; N Stein; P Langridge; L Altschmied; A Graner
Journal:  Theor Appl Genet       Date:  2006-06-01       Impact factor: 5.699

5.  Differential methylation of genes and repeats in land plants.

Authors:  Pablo D Rabinowicz; Robert Citek; Muhammad A Budiman; Andrew Nunberg; Joseph A Bedell; Nathan Lakey; Andrew L O'Shaughnessy; Lidia U Nascimento; W Richard McCombie; Robert A Martienssen
Journal:  Genome Res       Date:  2005-10       Impact factor: 9.043

Review 6.  A comprehensive crop genome research project: the Superhybrid Rice Genome Project in China.

Authors:  Jun Yu; Gane Ka-Shu Wong; Siqi Liu; Jian Wang; Huanming Yang
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-06-29       Impact factor: 6.237

7.  Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development.

Authors:  Lu Tian; M Paulus Fong; Jiyuan J Wang; Ning E Wei; Hongmei Jiang; R W Doerge; Z Jeffrey Chen
Journal:  Genetics       Date:  2004-09-15       Impact factor: 4.562

8.  The 46th Annual Maize Genetics Conference. Unlocking the secrets of the maize genome.

Authors:  Marja C P Timmermans; Thomas P Brutnell; Philip W Becraft
Journal:  Plant Physiol       Date:  2004-09       Impact factor: 8.340

9.  The Genomes of Oryza sativa: a history of duplications.

Authors:  Jun Yu; Jun Wang; Wei Lin; Songgang Li; Heng Li; Jun Zhou; Peixiang Ni; Wei Dong; Songnian Hu; Changqing Zeng; Jianguo Zhang; Yong Zhang; Ruiqiang Li; Zuyuan Xu; Shengting Li; Xianran Li; Hongkun Zheng; Lijuan Cong; Liang Lin; Jianning Yin; Jianing Geng; Guangyuan Li; Jianping Shi; Juan Liu; Hong Lv; Jun Li; Jing Wang; Yajun Deng; Longhua Ran; Xiaoli Shi; Xiyin Wang; Qingfa Wu; Changfeng Li; Xiaoyu Ren; Jingqiang Wang; Xiaoling Wang; Dawei Li; Dongyuan Liu; Xiaowei Zhang; Zhendong Ji; Wenming Zhao; Yongqiao Sun; Zhenpeng Zhang; Jingyue Bao; Yujun Han; Lingli Dong; Jia Ji; Peng Chen; Shuming Wu; Jinsong Liu; Ying Xiao; Dongbo Bu; Jianlong Tan; Li Yang; Chen Ye; Jingfen Zhang; Jingyi Xu; Yan Zhou; Yingpu Yu; Bing Zhang; Shulin Zhuang; Haibin Wei; Bin Liu; Meng Lei; Hong Yu; Yuanzhe Li; Hao Xu; Shulin Wei; Ximiao He; Lijun Fang; Zengjin Zhang; Yunze Zhang; Xiangang Huang; Zhixi Su; Wei Tong; Jinhong Li; Zongzhong Tong; Shuangli Li; Jia Ye; Lishun Wang; Lin Fang; Tingting Lei; Chen Chen; Huan Chen; Zhao Xu; Haihong Li; Haiyan Huang; Feng Zhang; Huayong Xu; Na Li; Caifeng Zhao; Shuting Li; Lijun Dong; Yanqing Huang; Long Li; Yan Xi; Qiuhui Qi; Wenjie Li; Bo Zhang; Wei Hu; Yanling Zhang; Xiangjun Tian; Yongzhi Jiao; Xiaohu Liang; Jiao Jin; Lei Gao; Weimou Zheng; Bailin Hao; Siqi Liu; Wen Wang; Longping Yuan; Mengliang Cao; Jason McDermott; Ram Samudrala; Jian Wang; Gane Ka-Shu Wong; Huanming Yang
Journal:  PLoS Biol       Date:  2005-02-01       Impact factor: 8.029

10.  Genotyping-by-Sequencing in Plants.

Authors:  Stéphane Deschamps; Victor Llaca; Gregory D May
Journal:  Biology (Basel)       Date:  2012-09-25
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