Literature DB >> 12667870

Diversity in the Oryza genus.

Duncan A Vaughan1, H Morishima, K Kadowaki.   

Abstract

The pan-tropical wild relatives of rice grow in a wide variety of habitats: forests, savanna, mountainsides, rivers and lakes. The completion of the sequencing of the rice nuclear and cytoplasmic genomes affords an opportunity to widen our understanding of the genomes of the genus Oryza. Research on the Oryza genus has begun to help to answer questions related to domestication, speciation, polyploidy and ecological adaptation that cannot be answered by studying rice alone. The wild relatives of rice have furnished genes for the hybrid rice revolution, and other genes from Oryza species with major impact on rice yields and sustainable rice production are likely to be found. Care is needed, however, when using wild relatives of rice in experiments and in interpreting the results of these experiments. Careful checking of species identity, maintenance of herbarium specimens and recording of Genbank accession numbers of material used in experiments should be standard procedure when studying wild relatives of rice.

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Mesh:

Year:  2003        PMID: 12667870     DOI: 10.1016/s1369-5266(03)00009-8

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  94 in total

1.  Molecular and cytogenetic characterization of an Oryza officinalis-O. sativa chromosome 4 addition line and its progenies.

Authors:  Huajun Jin; Guangxuan Tan; D S Brar; Ming Tang; Gang Li; Lili Zhu; Guangcun He
Journal:  Plant Mol Biol       Date:  2006-08-29       Impact factor: 4.076

2.  Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.

Authors:  Tomotaro Nishikawa; Duncan A Vaughan; Koh-ichi Kadowaki
Journal:  Theor Appl Genet       Date:  2005-01-14       Impact factor: 5.699

3.  Mating system of Brazilian Oryza glumaepatula populations studied with microsatellite markers.

Authors:  Marines M G Karasawa; Roland Vencovsky; Cynthia M Silva; Maria I Zucchi; Giancarlo C X Oliveira; Elizabeth A Veasey
Journal:  Ann Bot       Date:  2007-01-03       Impact factor: 4.357

4.  Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O. sativa japonica cultivar Hwaseongbyeo.

Authors:  D-B Yoon; K-H Kang; H-J Kim; H-G Ju; S-J Kwon; J-P Suh; O-Y Jeong; S-N Ahn
Journal:  Theor Appl Genet       Date:  2006-01-24       Impact factor: 5.699

5.  Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

Authors:  Jetty S S Ammiraju; Fei Lu; Abhijit Sanyal; Yeisoo Yu; Xiang Song; Ning Jiang; Ana Clara Pontaroli; Teri Rambo; Jennifer Currie; Kristi Collura; Jayson Talag; Chuanzhu Fan; Jose Luis Goicoechea; Andrea Zuccolo; Jinfeng Chen; Jeffrey L Bennetzen; Mingsheng Chen; Scott Jackson; Rod A Wing
Journal:  Plant Cell       Date:  2008-12-19       Impact factor: 11.277

6.  Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.

Authors:  Yoko Mizuta; Yoshiaki Harushima; Nori Kurata
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

7.  A complex population structure of the cassava pathogen Xanthomonas axonopodis pv. manihotis in recent years in the Caribbean Region of Colombia.

Authors:  César A Trujillo; Juan C Ochoa; María Fernanda Mideros; Silvia Restrepo; Camilo López; Adriana Bernal
Journal:  Microb Ecol       Date:  2014-04-24       Impact factor: 4.552

8.  Monosomic alien addition lines (MAALs) of Oryza rhizomatis in Oryza sativa: production, cytology, alien trait introgression, molecular analysis and breeding application.

Authors:  Sherry Lou Hechanova; Manas R Prusty; Sung-Ryul Kim; LaRue Ballesfin; Joie Ramos; G D Prahalada; Kshirod K Jena
Journal:  Theor Appl Genet       Date:  2018-07-21       Impact factor: 5.699

9.  Chloroplast DNA insertions into the nuclear genome of rice: the genes, sites and ages of insertion involved.

Authors:  Xingyi Guo; Songlin Ruan; Weiming Hu; Daguang Cai; Longjiang Fan
Journal:  Funct Integr Genomics       Date:  2007-11-10       Impact factor: 3.410

Review 10.  Structural and functional analysis of rice genome.

Authors:  Akhilesh K Tyagi; Jitendra P Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anumapa Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma
Journal:  J Genet       Date:  2004-04       Impact factor: 1.166

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