Literature DB >> 12667868

The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis.

Jeffrey L Bennetzen1, Jianxin Ma.   

Abstract

Small segments of rice genome sequence have been compared with that of the model plant Arabidopsis thaliana and with several closer relatives, including the cereals maize, rice, sorghum, barley and wheat. The rice genome is relatively stable relative to those of other grasses. Nevertheless, comparisons with other cereals have demonstrated that the DNA between cereal genes is highly variable and evolves rapidly. Genic regions have undergone many more small rearrangements than have been revealed by recombinational mapping studies. Tandem gene duplication/deletion is particularly common, but other types of deletions, inversions and translocations also occur. The many thousands of small genic rearrangements within the rice genome complicate but do not negate its use as a model for larger cereal genomes.

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Year:  2003        PMID: 12667868     DOI: 10.1016/s1369-5266(03)00015-3

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  50 in total

1.  The gibberellic-acid insensitive dwarfing gene sdw3 of barley is located on chromosome 2HS in a region that shows high colinearity with rice chromosome 7L.

Authors:  S Gottwald; N Stein; A Börner; T Sasaki; A Graner
Journal:  Mol Genet Genomics       Date:  2004-03-09       Impact factor: 3.291

2.  A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.

Authors:  Viktor Stolc; Lei Li; Xiangfeng Wang; Xueyong Li; Ning Su; Waraporn Tongprasit; Bin Han; Yongbiao Xue; Jiayang Li; Michael Snyder; Mark Gerstein; Jun Wang; Xing Wang Deng
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

3.  Molecular evidence for asymmetric evolution of sister duplicated blocks after cereal polyploidy.

Authors:  Hongbin Wang; Lujun Yu; Fei Lai; Liangshi Liu; Jinfa Wang
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

4.  High-frequency Ds remobilization over multiple generations in barley facilitates gene tagging in large genome cereals.

Authors:  Jaswinder Singh; Shibo Zhang; Calvin Chen; Laurel Cooper; Phil Bregitzer; Anne Sturbaum; Patrick M Hayes; Peggy G Lemaux
Journal:  Plant Mol Biol       Date:  2006-09-27       Impact factor: 4.076

5.  Leveraging the rice genome sequence for monocot comparative and translational genomics.

Authors:  H C Lohithaswa; F A Feltus; H P Singh; C D Bacon; C D Bailey; A H Paterson
Journal:  Theor Appl Genet       Date:  2007-05-24       Impact factor: 5.699

6.  A GeneTrek analysis of the maize genome.

Authors:  Renyi Liu; Clémentine Vitte; Jianxin Ma; A Assibi Mahama; Thanda Dhliwayo; Michael Lee; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-05       Impact factor: 11.205

7.  Fertility restorer locus Rf1 [corrected] of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12.

Authors:  R R Klein; P E Klein; J E Mullet; P Minx; W L Rooney; K F Schertz
Journal:  Theor Appl Genet       Date:  2005-08-03       Impact factor: 5.699

8.  A nomadic subtelomeric disease resistance gene cluster in common bean.

Authors:  Perrine David; Nicolas W G Chen; Andrea Pedrosa-Harand; Vincent Thareau; Mireille Sévignac; Steven B Cannon; Daniel Debouck; Thierry Langin; Valérie Geffroy
Journal:  Plant Physiol       Date:  2009-09-23       Impact factor: 8.340

Review 9.  Structural and functional analysis of rice genome.

Authors:  Akhilesh K Tyagi; Jitendra P Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anumapa Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma
Journal:  J Genet       Date:  2004-04       Impact factor: 1.166

10.  Rapid recent growth and divergence of rice nuclear genomes.

Authors:  Jianxin Ma; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-07       Impact factor: 11.205

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