Literature DB >> 12662938

Spruce budworm antifreeze protein: changes in structure and dynamics at low temperature.

Steffen P Graether1, Stéphane M Gagné, Leo Spyracopoulos, Zongchao Jia, Peter L Davies, Brian D Sykes.   

Abstract

Antifreeze proteins (AFPs) prevent the growth of ice, and are used by some organisms that live in sub-zero environments for protection against freezing. All AFPs are thought to function by an adsorption inhibition process. In order to elucidate the ice-binding mechanism, the structures of several AFPs have been determined, and have been shown to consist of different folds. Recently, the first structures of the highly active insect AFPs have been characterized. These proteins have a beta-helix structure, which adds yet another fold to the AFP family. The 90-residue spruce budworm (Choristoneura fumiferana) AFP consists of a beta-helix with 15 residues per coil. The structure contains two ranks of aligned threonine residues (known as the TXT motif), which were shown by mutagenesis experiments to be located in the ice-binding face. In our previous NMR study of this AFP at 30 degrees C, we found that the TXT face was not optimally defined because of the broadening of NMR resonances potentially due to weak oligomerization. We present here a structure of spruce budworm AFP determined at 5 degrees C, where this broadening is reduced. In addition, the 1H-15N NMR dynamics of the protein were examined at 30 degrees C and 5 degrees C. The results show that the spruce budworm AFP is more structured at 5 degrees C, and support the general observation that AFPs become more rigid as the temperature is lowered.

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Year:  2003        PMID: 12662938     DOI: 10.1016/s0022-2836(03)00235-3

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  16 in total

1.  (1)H, (13)C and (15)N resonance assignments of the antifreeze protein cfAFP-501 from spruce budworm at different temperatures.

Authors:  Congmin Li; Changwen Jin
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

2.  Increased flexibility decreases antifreeze protein activity.

Authors:  Shruti N Patel; Steffen P Graether
Journal:  Protein Sci       Date:  2010-11-11       Impact factor: 6.725

3.  Combined molecular dynamics and neural network method for predicting protein antifreeze activity.

Authors:  Daniel J Kozuch; Frank H Stillinger; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-07       Impact factor: 11.205

4.  Solution structure of an antifreeze protein CfAFP-501 from Choristoneura fumiferana.

Authors:  Congmin Li; Xianrong Guo; Zongchao Jia; Bin Xia; Changwen Jin
Journal:  J Biomol NMR       Date:  2005-07       Impact factor: 2.835

5.  Comparison of backbone dynamics of the type III antifreeze protein and antifreeze-like domain of human sialic acid synthase.

Authors:  Yong-Geun Choi; Chin-Ju Park; Hee-Eun Kim; Yeo-Jin Seo; Ae-Ree Lee; Seo-Ree Choi; Shim Sung Lee; Joon-Hwa Lee
Journal:  J Biomol NMR       Date:  2015-01-10       Impact factor: 2.835

6.  The importance of size and disorder in the cryoprotective effects of dehydrins.

Authors:  Stephanie L Hughes; Verena Schart; Janet Malcolmson; Kaley A Hogarth; David M Martynowicz; Erik Tralman-Baker; Shruti N Patel; Steffen P Graether
Journal:  Plant Physiol       Date:  2013-09-18       Impact factor: 8.340

7.  Polycarboxylates enhance beetle antifreeze protein activity.

Authors:  Natapol Amornwittawat; Sen Wang; John G Duman; Xin Wen
Journal:  Biochim Biophys Acta       Date:  2008-06-14

8.  Interfacial adsorption of antifreeze proteins: a neutron reflection study.

Authors:  Hai Xu; Shiamalee Perumal; Xiubo Zhao; Ning Du; Xiang-Yang Liu; Zongchao Jia; Jian R Lu
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

9.  Calcium interacts with antifreeze proteins and chitinase from cold-acclimated winter rye.

Authors:  Maja Stressmann; Satoshi Kitao; Marilyn Griffith; Christine Moresoli; León A Bravo; Alejandro G Marangoni
Journal:  Plant Physiol       Date:  2004-04-30       Impact factor: 8.340

10.  NMR characterizations of the ice binding surface of an antifreeze protein.

Authors:  Jiang Hong; Yunfei Hu; Congmin Li; Zongchao Jia; Bin Xia; Changwen Jin
Journal:  PLoS One       Date:  2010-12-28       Impact factor: 3.240

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