Literature DB >> 12656614

Equilibrium O2 distribution in the Zn2+-protoporphyrin IX deoxymyoglobin mimic: application to oxygen migration pathway analysis.

Lynn McNaughton1, Griselda Hernández, David M LeMaster.   

Abstract

Proton spin relaxation induced by the triplet ground state of O(2) in the zinc-containing diamagnetic analogue of sperm whale deoxymyoglobin has been measured as a function of oxygen concentration. As no covalent binding of oxygen to the metal occurs in the zinc species, the relaxation effects of O(2) on the protein (1)H resonances arise exclusively via much weaker noncovalent interactions. The relaxation effects at the amide proton sites are found to be highly localized and are derived almost exclusively from O(2) binding at the four previously identified xenon binding sites. Relative binding constants of 1.0, 0.08, 0.07, and 0.23 were determined for the Xe 1, Xe 2, Xe 3, and Xe 4 sites, respectively. In combination with earlier measurements of the kinetics of the heme binding of oxygen, these equilibria measurements enable a more detailed analysis of models characterizing O(2) entry and egress. A correlation is established between the fraction of O(2) which enters the Fe(2+)-binding site via rotation of the distal histidine side chain (so-called "histidine gate") and the experimentally observable O(2) (or CO) lifetime in the Xe 1 site. A physiological role for these secondary oxygen binding sites is proposed in enhancing the efficiency of the O(2) association reaction by rendering more favorable its competition with water binding in the distal heme pocket.

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Year:  2003        PMID: 12656614     DOI: 10.1021/ja028064s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Competition with xenon elicits ligand migration and escape pathways in myoglobin.

Authors:  Catherine Tetreau; Yves Blouquit; Eugene Novikov; Eric Quiniou; Daniel Lavalette
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

2.  Water and ligand entry in myoglobin: assessing the speed and extent of heme pocket hydration after CO photodissociation.

Authors:  Robert A Goldbeck; Shyam Bhaskaran; Cheri Ortega; Juan L Mendoza; John S Olson; Jayashree Soman; David S Kliger; Raymond M Esquerra
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

3.  The stretching frequencies of bound alkyl isocyanides indicate two distinct ligand orientations within the distal pocket of myoglobin.

Authors:  George C Blouin; John S Olson
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

4.  Analysis of O2-binding Sites in Proteins Using Gas-Pressure NMR Spectroscopy: Outer Surface Protein A.

Authors:  Takahiro Kawamura; Takuro Wakamoto; Soichiro Kitazawa; Shun Sakuraba; Tomoshi Kameda; Ryo Kitahara
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

5.  Ligand migration pathway and protein dynamics in myoglobin: a time-resolved crystallographic study on L29W MbCO.

Authors:  Marius Schmidt; Karin Nienhaus; Reinhard Pahl; Angela Krasselt; Spencer Anderson; Fritz Parak; G Ulrich Nienhaus; Vukica Srajer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-05       Impact factor: 11.205

6.  Nuclear magnetic resonance-based determination of dioxygen binding sites in protein cavities.

Authors:  Ryo Kitahara; Shun Sakuraba; Tomoshi Kameda; Sanshiro Okuda; Mengjun Xue; Frans A A Mulder
Journal:  Protein Sci       Date:  2018-01-25       Impact factor: 6.725

7.  Modulating distal cavities in the α and β subunits of human HbA reveals the primary ligand migration pathway.

Authors:  Ivan Birukou; David H Maillett; Anastasiya Birukova; John S Olson
Journal:  Biochemistry       Date:  2011-08-08       Impact factor: 3.162

8.  Optical detection of disordered water within a protein cavity.

Authors:  Robert A Goldbeck; Marlisa L Pillsbury; Russell A Jensen; Juan L Mendoza; Rosa L Nguyen; John S Olson; Jayashree Soman; David S Kliger; Raymond M Esquerra
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

9.  Mapping oxygen accessibility to ribonuclease a using high-resolution NMR relaxation spectroscopy.

Authors:  Ching-Ling Teng; Robert G Bryant
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

10.  Detecting O2 binding sites in protein cavities.

Authors:  Ryo Kitahara; Yuichi Yoshimura; Mengjun Xue; Tomoshi Kameda; Frans A A Mulder
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

  10 in total

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