Literature DB >> 12654268

Pressure-dependent changes in the solution structure of hen egg-white lysozyme.

Mohamed Refaee1, Tomoko Tezuka, Kazuyuki Akasaka, Michael P Williamson.   

Abstract

The "rules" governing protein structure and stability are still poorly understood. Important clues have come from proteins that operate under extreme conditions, because these clarify the physical constraints on proteins. One obvious extreme is pressure, but so far little is known of the behavior of proteins under pressure, largely for technical reasons. We have therefore developed new methodology for calculating structure change in solution with pressure, using NMR chemical shift changes, and we report the change in structure of lysozyme on going from 30 bar to 2000 bar, this being the first solution structure of a globular protein under pressure. The alpha-helical domain is compressed by approximately 1%, due to tighter packing between helices. The interdomain region is also compressed. By contrast, the beta-sheet domain displays very little overall compression, but undergoes more structural distortion than the alpha-domain. The largest volume changes tend to occur close to hydrated cavities. Because isothermal compressibility is related to volume fluctuation, this suggests that buried water molecules play an important role in conformational fluctuation at normal pressures, and are implicated as the nucleation sites for structural changes leading to pressure denaturation or channel opening. Copyright 2003 Elsevier Science Ltd.

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Year:  2003        PMID: 12654268     DOI: 10.1016/s0022-2836(03)00209-2

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  29 in total

1.  The behavior of the hydrophobic effect under pressure and protein denaturation.

Authors:  J Raúl Grigera; Andres N McCarthy
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

2.  TIGER2 with solvent energy averaging (TIGER2A): An accelerated sampling method for large molecular systems with explicit representation of solvent.

Authors:  Xianfeng Li; James A Snyder; Steven J Stuart; Robert A Latour
Journal:  J Chem Phys       Date:  2015-10-14       Impact factor: 3.488

3.  Effects of pressure on the dynamics of an oligomeric protein from deep-sea hyperthermophile.

Authors:  Utsab R Shrestha; Debsindhu Bhowmik; John R D Copley; Madhusudan Tyagi; Juscelino B Leão; Xiang-qiang Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

4.  Role of protein cavities on unfolding volume change and on internal dynamics under pressure.

Authors:  Patrizia Cioni
Journal:  Biophys J       Date:  2006-11-01       Impact factor: 4.033

5.  Picosecond fluctuating protein energy landscape mapped by pressure temperature molecular dynamics simulation.

Authors:  Lars Meinhold; Jeremy C Smith; Akio Kitao; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-23       Impact factor: 11.205

6.  Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin.

Authors:  Takashi Imai; Shusaku Ohyama; Andriy Kovalenko; Fumio Hirata
Journal:  Protein Sci       Date:  2007-07-27       Impact factor: 6.725

7.  Combining structure and dynamics: non-denaturing high-pressure effect on lysozyme in solution.

Authors:  Maria Grazia Ortore; Francesco Spinozzi; Paolo Mariani; Alessandro Paciaroni; Leandro R S Barbosa; Heinz Amenitsch; Milos Steinhart; Jacques Ollivier; Daniela Russo
Journal:  J R Soc Interface       Date:  2009-07-01       Impact factor: 4.118

8.  Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.

Authors:  Buz Barstow; Nozomi Ando; Chae Un Kim; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-03       Impact factor: 11.205

9.  Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations.

Authors:  David J Wilton; Ryo Kitahara; Kazuyuki Akasaka; Maya J Pandya; Mike P Williamson
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

10.  Coupling of pressure-induced structural shifts to spectral changes in a yellow fluorescent protein.

Authors:  Buz Barstow; Nozomi Ando; Chae Un Kim; Sol M Gruner
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

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