Literature DB >> 12652118

Determination of the torsion angles of alanine and glycine residues of model compounds of spider silk (AGG)(10) using solid-state NMR methods.

Jun Ashida1, Kosuke Ohgo, Kohei Komatsu, Ayumi Kubota, Tetsuo Asakura.   

Abstract

Spiders synthesize several kinds of silk fibers. In the primary structure of spider silk, one of the major ampullate (dragline, frame) silks, spidroin 1, and flagelliform silk (core fibers of adhesive spiral), there are common repeated X-Gly-Gly (X = Ala, Leu, Pro, Tyr, Glu, and Arg) sequences, which are considered to be related to the elastic character of these fibers. In this paper, two dimensional spin diffusion solid-state NMR under off magic angle spinning (OMAS), (13)C chemical shift contour plots, and Rotational Echo DOuble Resonance (REDOR) were applied to determine the torsion angles of one Ala and two kinds of Gly residues in the Ala-Gly-Gly sequence of (13)C=O isotope-labeled (Ala-Gly-Gly)(10). The torsion angles were determined to be (phi, psi) = (-90 degrees, 150 degrees ) within an experimental error of +/-10 degrees for each residue. This conformation is characterized as 3(1) helix which is in agreement with the structure proposed from the X-ray powder diffraction pattern of poly(Ala-Gly-Gly). The 3(1) helix of (Ala-Gly-Gly)(10) does not change by formic acid treatment although (Ala-Gly)(15) easily changes from the silk I conformation (the structure of Bombyx mori silk fibroin before spinning in the solid state) to silk II conformation (the structure of the silk fiber after spinning) by such treatment. Thus, the 3(1) helix conformation of (Ala-Gly-Gly)(10) is considered very stable. Furthermore, the torsion angles of the 16th Leu residue of (Leu-Gly-Gly)(10) were also determined as (phi, psi) = (-90 degrees, 150 degrees ) and this peptide is also considered to take 3(1) helix conformation.

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Year:  2003        PMID: 12652118     DOI: 10.1023/a:1022220428948

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

Review 1.  Synthetic spider silk: a modular fiber.

Authors:  M B Hinman; J A Jones; R V Lewis
Journal:  Trends Biotechnol       Date:  2000-09       Impact factor: 19.536

Review 2.  Molecular biology of spider silk.

Authors:  S Winkler; D L Kaplan
Journal:  J Biotechnol       Date:  2000-08       Impact factor: 3.307

3.  Structural analysis of silk with 13C NMR chemical shift contour plots.

Authors:  T Asakura; M Iwadate; M Demura; M P Williamson
Journal:  Int J Biol Macromol       Date:  1999 Mar-Apr       Impact factor: 6.953

4.  Evidence from flagelliform silk cDNA for the structural basis of elasticity and modular nature of spider silks.

Authors:  C Y Hayashi; R V Lewis
Journal:  J Mol Biol       Date:  1998-02-06       Impact factor: 5.469

5.  Structural studies of spider silk proteins in the fiber.

Authors:  A D Parkhe; S K Seeley; K Gardner; L Thompson; R V Lewis
Journal:  J Mol Recognit       Date:  1997 Jan-Feb       Impact factor: 2.137

6.  Structure of Bombyx mori silk fibroin before spinning in solid state studied with wide angle x-ray scattering and (13)C cross-polarization/magic angle spinning NMR.

Authors:  T Asakura; T Yamane; Y Nakazawa; T Kameda; K Ando
Journal:  Biopolymers       Date:  2001-04-15       Impact factor: 2.505

7.  C alpha and C beta carbon-13 chemical shifts in proteins from an empirical database.

Authors:  M Iwadate; T Asakura; M P Williamson
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

8.  Genetically engineered syntheses of tandem repetitive polypeptides consisting of glycine-rich sequence of spider dragline silk.

Authors:  Y Fukushima
Journal:  Biopolymers       Date:  1998-04       Impact factor: 2.505

9.  The crystal structures of poly(LAla-Gly-Gly-Gly)II and Poly(LAla-Gly-Gly)II.

Authors:  B Lotz; H D Keith
Journal:  J Mol Biol       Date:  1971-10-14       Impact factor: 5.469

Review 10.  The mechanical design of spider silks: from fibroin sequence to mechanical function.

Authors:  J M Gosline; P A Guerette; C S Ortlepp; K N Savage
Journal:  J Exp Biol       Date:  1999-12       Impact factor: 3.312

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  10 in total

1.  Characterizing the secondary protein structure of black widow dragline silk using solid-state NMR and X-ray diffraction.

Authors:  Janelle E Jenkins; Sujatha Sampath; Emily Butler; Jihyun Kim; Robert W Henning; Gregory P Holland; Jeffery L Yarger
Journal:  Biomacromolecules       Date:  2013-09-26       Impact factor: 6.988

2.  The design of silk fiber composition in moths has been conserved for more than 150 million years.

Authors:  Naoyuki Yonemura; Frantisek Sehnal
Journal:  J Mol Evol       Date:  2006-06-03       Impact factor: 2.395

3.  Tightly winding structure of sequential model peptide for repeated helical region in Samia cynthia ricini silk fibroin studied with solid-state NMR.

Authors:  Yasumoto Nakazawa; Mie Bamba; Satoko Nishio; Tetsuo Asakura
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

Review 4.  Silks produced by insect labial glands.

Authors:  Frantisek Sehnal; Tara Sutherland
Journal:  Prion       Date:  2008-10-20       Impact factor: 3.931

5.  Quantitative Correlation between the protein primary sequences and secondary structures in spider dragline silks.

Authors:  Janelle E Jenkins; Melinda S Creager; Randolph V Lewis; Gregory P Holland; Jeffery L Yarger
Journal:  Biomacromolecules       Date:  2010-01-11       Impact factor: 6.988

6.  Conservation of silk genes in Trichoptera and Lepidoptera.

Authors:  Naoyuki Yonemura; Kazuei Mita; Toshiki Tamura; Frantisek Sehnal
Journal:  J Mol Evol       Date:  2009-05-16       Impact factor: 2.395

7.  Molecular evolution of lepidopteran silk proteins: insights from the ghost moth, Hepialus californicus.

Authors:  Matthew A Collin; Kazuei Mita; Frantisek Sehnal; Cheryl Y Hayashi
Journal:  J Mol Evol       Date:  2010-05-11       Impact factor: 2.395

8.  Inverse temperature transition of elastin like motifs in major ampullate dragline silk: MD simulations of short peptides and NMR studies of water dynamics.

Authors:  Obehi T Ukpebor; Anup Shah; Emanuel Bazov; Gregory S Boutis
Journal:  Soft Matter       Date:  2014-02-07       Impact factor: 3.679

9.  Secondary Structure Adopted by the Gly-Gly-X Repetitive Regions of Dragline Spider Silk.

Authors:  Geoffrey M Gray; Arjan van der Vaart; Chengchen Guo; Justin Jones; David Onofrei; Brian R Cherry; Randolph V Lewis; Jeffery L Yarger; Gregory P Holland
Journal:  Int J Mol Sci       Date:  2016-12-02       Impact factor: 5.923

Review 10.  Structure and Dynamics of Spider Silk Studied with Solid-State Nuclear Magnetic Resonance and Molecular Dynamics Simulation.

Authors:  Tetsuo Asakura
Journal:  Molecules       Date:  2020-06-05       Impact factor: 4.411

  10 in total

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