Literature DB >> 12648564

Models of bacteriophage DNA packaging motors.

Philip Serwer1.   

Abstract

An ATP-dependent motor drives a DNA genome into a bacteriophage capsid during morphogenesis of double-stranded DNA bacteriophages both in vivo and in vitro. The DNA molecule enters the capsid through a channel in the center of a symmetric protein ring called a connector. Mechanisms in two classes have been proposed for this motor: (1) An ATP-driven rotating connector pulls a DNA molecule via serial power strokes. (2) The connector rectifies DNA motion that is either thermal, biased thermal, or oscillating electrical field-induced (motor-ratchet hypothesis). Mechanisms in the first class have previously been proposed to explain the detailed structure of DNA packaging motors. The present study demonstrates that the motor-ratchet hypothesis also explains the current data, including data in the following categories: biochemical genetics, energetics, structure, and packaging dynamics.

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Year:  2003        PMID: 12648564     DOI: 10.1016/s1047-8477(02)00628-7

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  21 in total

Review 1.  Biogenesis, architecture, and function of bacterial type IV secretion systems.

Authors:  Peter J Christie; Krishnamohan Atmakuri; Vidhya Krishnamoorthy; Simon Jakubowski; Eric Cascales
Journal:  Annu Rev Microbiol       Date:  2005       Impact factor: 15.500

Review 2.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

3.  Modular assembly of chimeric phi29 packaging RNAs that support DNA packaging.

Authors:  Yun Fang; Dan Shu; Feng Xiao; Peixuan Guo; Peter Z Qin
Journal:  Biochem Biophys Res Commun       Date:  2008-06-02       Impact factor: 3.575

4.  Three-way junction conformation dictates self-association of phage packaging RNAs.

Authors:  Yumeng Hao; Jeffrey S Kieft
Journal:  RNA Biol       Date:  2016-05-24       Impact factor: 4.652

5.  Agarose gel electrophoresis reveals structural fluidity of a phage T3 DNA packaging intermediate.

Authors:  Philip Serwer; Elena T Wright
Journal:  Electrophoresis       Date:  2012-01       Impact factor: 3.535

6.  DNA packaging-associated hyper-capsid expansion of bacteriophage t3.

Authors:  Philip Serwer; Elena T Wright; Kevin Hakala; Susan T Weintraub; Min Su; Wen Jiang
Journal:  J Mol Biol       Date:  2010-02-01       Impact factor: 5.469

7.  One-way traffic of a viral motor channel for double-stranded DNA translocation.

Authors:  Peng Jing; Farzin Haque; Dan Shu; Carlo Montemagno; Peixuan Guo
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

Review 8.  Construction of bacteriophage phi29 DNA packaging motor and its applications in nanotechnology and therapy.

Authors:  Tae Jin Lee; Chad Schwartz; Peixuan Guo
Journal:  Ann Biomed Eng       Date:  2009-06-04       Impact factor: 3.934

Review 9.  Common mechanisms of DNA translocation motors in bacteria and viruses using one-way revolution mechanism without rotation.

Authors:  Peixuan Guo; Zhengyi Zhao; Jeannie Haak; Shaoying Wang; Dong Wu; Bing Meng; Tao Weitao
Journal:  Biotechnol Adv       Date:  2014 Jul-Aug       Impact factor: 14.227

Review 10.  Viral capsids: mechanical characteristics, genome packaging and delivery mechanisms.

Authors:  W H Roos; I L Ivanovska; A Evilevitch; G J L Wuite
Journal:  Cell Mol Life Sci       Date:  2007-06       Impact factor: 9.261

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