Literature DB >> 12641474

High-throughput crystallography at an affordable cost: the TB Structural Genomics Consortium Crystallization Facility.

Bernhard Rupp1.   

Abstract

The crystallization facility of the TB Structural Genomics Consortium, one of nine P50 structural genomics centers sponsored by the National Institutes of Health, provides TB consortium members with automated crystallization, data collection, and basic molecular replacement structure solution up to bias-minimized maps. In contrast to venture capital -funded commercial enterprises, the TB consortium facilities are decentralized and aim to develop high-throughput crystallography methods and automation on a comparatively small budget. In addition to financial constraints, the logistics and organization of a production environment differ considerably from academic settings. The TB Structural Genomics Consortium crystallization facility may thus provide a model for cost-effective, efficient high-throughput crystallography. Processes and methods presented in this review should assist academic institutions planning to invest in high-throughput structural biology to assess both the rewards and risks of establishing structural genomics programs.

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Year:  2003        PMID: 12641474     DOI: 10.1021/ar020021t

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  12 in total

1.  A droplet-based, composite PDMS/glass capillary microfluidic system for evaluating protein crystallization conditions by microbatch and vapor-diffusion methods with on-chip X-ray diffraction.

Authors:  Bo Zheng; Joshua D Tice; L Spencer Roach; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2004-05-03       Impact factor: 15.336

2.  Laboratory scale structural genomics.

Authors:  Brent W Segelke; Johana Schafer; Matthew A Coleman; Tim P Lekin; Dominique Toppani; Krzysztof J Skowronek; Katherine A Kantardjieff; Bernhard Rupp
Journal:  J Struct Funct Genomics       Date:  2004

3.  How far can we go with structural mass spectrometry of protein complexes?

Authors:  Michal Sharon
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-04       Impact factor: 3.109

Review 4.  Using nanoliter plugs in microfluidics to facilitate and understand protein crystallization.

Authors:  Bo Zheng; Cory J Gerdts; Rustem F Ismagilov
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

5.  Identifying protein construct variants with increased crystallization propensity--a case study.

Authors:  Guido A Malawski; Roman C Hillig; Felipe Monteclaro; Uwe Eberspaecher; Arndt A P Schmitz; Kerstin Crusius; Martina Huber; Ursula Egner; Peter Donner; Beate Müller-Tiemann
Journal:  Protein Sci       Date:  2006-12       Impact factor: 6.725

Review 6.  Automated robotic harvesting of protein crystals-addressing a critical bottleneck or instrumentation overkill?

Authors:  Robert Viola; Peter Carman; Jace Walsh; Daniel Frankel; Bernhard Rupp
Journal:  J Struct Funct Genomics       Date:  2007-10-27

7.  Cloning, expression, purification, crystallization and preliminary X-ray studies of epoxide hydrolases A and B from Mycobacterium tuberculosis.

Authors:  Bichitra K Biswal; Grace Garen; Maia M Cherney; Craig Garen; Michael N G James
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-01-27

Review 8.  Structural biology and bioinformatics in drug design: opportunities and challenges for target identification and lead discovery.

Authors:  Tom L Blundell; Bancinyane L Sibanda; Rinaldo Wander Montalvão; Suzanne Brewerton; Vijayalakshmi Chelliah; Catherine L Worth; Nicholas J Harmer; Owen Davies; David Burke
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

9.  Prediction of protein crystallization outcome using a hybrid method.

Authors:  Frank H Zucker; Christine Stewart; Jaclyn dela Rosa; Jessica Kim; Li Zhang; Liren Xiao; Jenni Ross; Alberto J Napuli; Natascha Mueller; Lisa J Castaneda; Stephen R Nakazawa Hewitt; Tracy L Arakaki; Eric T Larson; Easwara Subramanian; Christophe L M J Verlinde; Erkang Fan; Frederick S Buckner; Wesley C Van Voorhis; Ethan A Merritt; Wim G J Hol
Journal:  J Struct Biol       Date:  2010-03-27       Impact factor: 2.867

10.  The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.

Authors:  Bichitra K Biswal; Karolyn Au; Maia M Cherney; Craig Garen; Michael N G James
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-07-24
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