Literature DB >> 12634912

The catalytic cycle of tyrosinase: peroxide attack on the phenolate ring followed by O[bond]O cleavage.

Per E M Siegbahn1.   

Abstract

The oxidation of phenols to ortho-quinones, catalyzed by tyrosinase, has been studied using the hybrid DFT method B3LYP. Since no X-ray structure exists for tyrosinase, information from the related enzymes hemocyanin and catechol oxidase were used to set up a chemical model for the calculations. Previous studies have indicated that the direct cleavage of O(2) forming a Cu(2)(III,III) state is energetically very unlikely. The present study therefore followed another mechanism previously suggested. In this mechanism, dioxygen attacks the phenolate ring which is then followed by O[bond]O cleavage. The calculations give a reasonable barrier for the O(2) attack of only 12.3 kcal/mol, provided one of the copper ligands is able to move substantially away from its direct copper coordination. This can be achieved with six histidine ligands even if these ligands are held in their positions by the enzyme, but can also be achieved if one of the coppers only has two histidine ligands and the third ligand is water. The next step of O[bond]O cleavage has a computed barrier of 14.4 kcal/mol, in reasonable agreement with the experimental overall rate for the catalytic cycle. For the other steps of the mechanism, only a preliminary investigation was made, indicating a few problems which require future QM/MM studies.

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Year:  2003        PMID: 12634912     DOI: 10.1007/s00775-003-0449-4

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  22 in total

1.  Density Functional and Electrostatic Calculations of Manganese Superoxide Dismutase Active Site Complexes in Protein Environments.

Authors:  Jian Li; Cindy L. Fisher; Robert Konecny; Donald Bashford; Louis Noodleman
Journal:  Inorg Chem       Date:  1999-03-08       Impact factor: 5.165

Review 2.  Mechanisms of metalloenzymes studied by quantum chemical methods.

Authors:  Per E M Siegbahn
Journal:  Q Rev Biophys       Date:  2003-02       Impact factor: 5.318

3.  Density Functional Calculations of Electronic Structure, Charge Distribution, and Spin Coupling in Manganese-Oxo Dimer Complexes.

Authors:  X. G. Zhao; W. H. Richardson; J.-L. Chen; J. Li; L. Noodleman; H.-L. Tsai; D. N. Hendrickson
Journal:  Inorg Chem       Date:  1997-03-12       Impact factor: 5.165

4.  Ligand macrocycle structural effects on copper-dioxygen reactivity.

Authors:  B M Lam; J A Halfen; V G Young; J R Hagadorn; P L Holland; A Lledós; L Cucurull-Sánchez; J J Novoa; S Alvarez; W B Tolman
Journal:  Inorg Chem       Date:  2000-09-04       Impact factor: 5.165

5.  Novel tert-butyl migration in copper-mediated phenol ortho-oxygenation implicates a mechanism involving conversion of a 6-hydroperoxy-2,4-cyclohexadienone directly to an o-quinone

Authors: 
Journal:  J Org Chem       Date:  2000-08-11       Impact factor: 4.354

6.  CuZn Superoxide Dismutase Geometry Optimization, Energetics, and Redox Potential Calculations by Density Functional and Electrostatic Methods.

Authors:  Robert Konecny; Jian Li; Cindy L. Fisher; Valerie Dillet; Donald Bashford; Louis Noodleman
Journal:  Inorg Chem       Date:  1999-03-08       Impact factor: 5.165

7.  Theoretical Model Studies of the Iron Dimer Complex of MMO and RNR.

Authors:  Per E. M. Siegbahn
Journal:  Inorg Chem       Date:  1999-06-14       Impact factor: 5.165

8.  Contrasting copper-dioxygen chemistry arising from alike tridentate alkyltriamine copper(I) complexes.

Authors:  Hong-Chang Liang; Christiana Xin Zhang; Mark J Henson; Roger D Sommer; Karen R Hatwell; Susan Kaderli; Andreas D Zuberbühler; Arnold L Rheingold; Edward I Solomon; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2002-04-24       Impact factor: 15.419

Review 9.  Bis(mu-oxo)dimetal "diamond" cores in copper and iron complexes relevant to biocatalysis.

Authors:  Lawrence Que; William B Tolman
Journal:  Angew Chem Int Ed Engl       Date:  2002-04-02       Impact factor: 15.336

10.  Reversible cleavage and formation of the dioxygen O-O bond within a dicopper complex.

Authors:  J A Halfen; S Mahapatra; E C Wilkinson; S Kaderli; V G Young; L Que; A D Zuberbühler; W B Tolman
Journal:  Science       Date:  1996-03-08       Impact factor: 47.728

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  16 in total

1.  The catalytic cycle of catechol oxidase.

Authors:  Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2004-06-05       Impact factor: 3.358

Review 2.  Reduction of dioxygen by enzymes containing copper.

Authors:  Isabel Bento; M Arménia Carrondo; Peter F Lindley
Journal:  J Biol Inorg Chem       Date:  2006-05-20       Impact factor: 3.358

Review 3.  Using synthetic chemistry to understand copper protein active sites: a personal perspective.

Authors:  William B Tolman
Journal:  J Biol Inorg Chem       Date:  2006-01-27       Impact factor: 3.358

4.  The performance of hybrid DFT for mechanisms involving transition metal complexes in enzymes.

Authors:  Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2006-07-08       Impact factor: 3.358

5.  Theoretical study of the catalytic mechanism of catechol oxidase.

Authors:  Mireia Güell; Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2007-09-20       Impact factor: 3.358

Review 6.  Recent developments of the quantum chemical cluster approach for modeling enzyme reactions.

Authors:  Per E M Siegbahn; Fahmi Himo
Journal:  J Biol Inorg Chem       Date:  2009-05-13       Impact factor: 3.358

7.  Calculated proton uptake on anaerobic reduction of cytochrome C oxidase: is the reaction electroneutral?

Authors:  Yifan Song; Ekaterina Michonova-Alexova; M R Gunner
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

8.  Electrostatic environment of hemes in proteins: pK(a)s of hydroxyl ligands.

Authors:  Yifan Song; Junjun Mao; M R Gunner
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

9.  The crystal structure of an extracellular catechol oxidase from the ascomycete fungus Aspergillus oryzae.

Authors:  Nina Hakulinen; Chiara Gasparetti; Heidi Kaljunen; Kristiina Kruus; Juha Rouvinen
Journal:  J Biol Inorg Chem       Date:  2013-09-17       Impact factor: 3.358

10.  Mechanistic insight into the catechol oxidase activity by a biomimetic dinuclear copper complex.

Authors:  Alessandro Granata; Enrico Monzani; Luigi Casella
Journal:  J Biol Inorg Chem       Date:  2004-09-22       Impact factor: 3.358

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