Literature DB >> 12634120

Application of genomics to toxicology research.

Russell S Thomas1, David R Rank, Sharron G Penn, Gina M Zastrow, Kevin R Hayes, Tianhua Hu, Kalyan Pande, Mark Lewis, Stevan B Jovanovich, Christopher A Bradfield.   

Abstract

Traditional models of toxicity have relied on dissecting chemical action into pharmacokinetic and pharmacodynamic processes. However, the integration of genomic information with toxicology will enhance our basic understanding of these processes and significantly change the way we apply toxicological information to risk assessment and regulatory problems. In this article, we summarize the application of gene expression information and polymorphism discovery to four areas in toxicology: toxicity testing, cross-species extrapolation, understanding mechanism of action, and susceptibility.

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Year:  2002        PMID: 12634120      PMCID: PMC1241273          DOI: 10.1289/ehp.02110s6919

Source DB:  PubMed          Journal:  Environ Health Perspect        ISSN: 0091-6765            Impact factor:   9.031


  26 in total

1.  Knowledge-based analysis of microarray gene expression data by using support vector machines.

Authors:  M P Brown; W N Grundy; D Lin; N Cristianini; C W Sugnet; T S Furey; M Ares; D Haussler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

2.  Identification of toxicologically predictive gene sets using cDNA microarrays.

Authors:  R S Thomas; D R Rank; S G Penn; G M Zastrow; K R Hayes; K Pande; E Glover; T Silander; M W Craven; J K Reddy; S B Jovanovich; C A Bradfield
Journal:  Mol Pharmacol       Date:  2001-12       Impact factor: 4.436

3.  A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms.

Authors:  R Sachidanandam; D Weissman; S C Schmidt; J M Kakol; L D Stein; G Marth; S Sherry; J C Mullikin; B J Mortimore; D L Willey; S E Hunt; C G Cole; P C Coggill; C M Rice; Z Ning; J Rogers; D R Bentley; P Y Kwok; E R Mardis; R T Yeh; B Schultz; L Cook; R Davenport; M Dante; L Fulton; L Hillier; R H Waterston; J D McPherson; B Gilman; S Schaffner; W J Van Etten; D Reich; J Higgins; M J Daly; B Blumenstiel; J Baldwin; N Stange-Thomann; M C Zody; L Linton; E S Lander; D Altshuler
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

4.  Oral cancer in vivo gene expression profiling assisted by laser capture microdissection and microarray analysis.

Authors:  I Alevizos; M Mahadevappa; X Zhang; H Ohyama; Y Kohno; M Posner; G T Gallagher; M Varvares; D Cohen; D Kim; R Kent; R B Donoff; R Todd; C M Yung; J A Warrington; D T Wong
Journal:  Oncogene       Date:  2001-09-27       Impact factor: 9.867

5.  Divergent transcriptional responses to independent genetic causes of cardiac hypertrophy.

Authors:  B J Aronow; T Toyokawa; A Canning; K Haghighi; U Delling; E Kranias; J D Molkentin; G W Dorn
Journal:  Physiol Genomics       Date:  2001-06-06       Impact factor: 3.107

6.  Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles.

Authors:  J F Waring; R A Jolly; R Ciurlionis; P Y Lum; J T Praestgaard; D C Morfitt; B Buratto; C Roberts; E Schadt; R G Ulrich
Journal:  Toxicol Appl Pharmacol       Date:  2001-08-15       Impact factor: 4.219

7.  Prediction of compound signature using high density gene expression profiling.

Authors:  Hisham K Hamadeh; Pierre R Bushel; Supriya Jayadev; Olimpia DiSorbo; Lee Bennett; Leping Li; Raymond Tennant; Raymond Stoll; J Carl Barrett; Richard S Paules; Kerry Blanchard; Cynthia A Afshari
Journal:  Toxicol Sci       Date:  2002-06       Impact factor: 4.849

8.  The transcriptional signature of dioxin in human hepatoma HepG2 cells.

Authors:  A Puga; A Maier; M Medvedovic
Journal:  Biochem Pharmacol       Date:  2000-10-15       Impact factor: 5.858

9.  Sequence variation in the human angiotensin converting enzyme.

Authors:  M J Rieder; S L Taylor; A G Clark; D A Nickerson
Journal:  Nat Genet       Date:  1999-05       Impact factor: 38.330

10.  The sequence of the human genome.

Authors:  J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; H O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; J R Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G Subramanian; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; A G Clark; J Nadeau; V A McKusick; N Zinder; A J Levine; R J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; S Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; S Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; D Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; E Suh; R Thomas; N N Tint; S Tse; C Vech; G Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; J F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Deslattes Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

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  7 in total

1.  New "Omics" Approaches as Tools to Explore Mechanistic Nanotoxicology.

Authors:  Célia Ventura; Vukosava Torres; Luís Vieira; Bruno Gomes; António Sebastião Rodrigues; José Rueff; Deborah Penque; Maria João Silva
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

Review 2.  The aryl hydrocarbon receptor: a perspective on potential roles in the immune system.

Authors:  Emily A Stevens; Joshua D Mezrich; Christopher A Bradfield
Journal:  Immunology       Date:  2009-07       Impact factor: 7.397

Review 3.  A decade of toxicological trends: what the papers say.

Authors:  Phumzile Sikakana; Ruth A Roberts
Journal:  Toxicol Res (Camb)       Date:  2020-10-08       Impact factor: 3.524

4.  Chemical mixtures: considering the evolution of toxicology and chemical assessment.

Authors:  Emily Monosson
Journal:  Environ Health Perspect       Date:  2005-04       Impact factor: 9.031

Review 5.  Database development in toxicogenomics: issues and efforts.

Authors:  William B Mattes; Syril D Pettit; Susanna-Assunta Sansone; Pierre R Bushel; Michael D Waters
Journal:  Environ Health Perspect       Date:  2004-03       Impact factor: 9.031

6.  Toxicogenomics of subchronic hexachlorobenzene exposure in Brown Norway rats.

Authors:  Janine Ezendam; Frank Staedtler; Jeroen Pennings; Rob J Vandebriel; Raymond Pieters; Johannes H Harleman; Joseph G Vos
Journal:  Environ Health Perspect       Date:  2004-05       Impact factor: 9.031

7.  Assessing cumulative health risks from exposure to environmental mixtures - three fundamental questions.

Authors:  Ken Sexton; Dale Hattis
Journal:  Environ Health Perspect       Date:  2007-01-24       Impact factor: 9.031

  7 in total

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