Literature DB >> 12627950

NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain.

Jikui Song1, Michael Laskowski, M A Qasim, John L Markley.   

Abstract

From the larger set of 191 variants at all the variable contact positions in the turkey ovomucoid third domain, we selected a subset that consists of Asp, Glu, His, and Lys residues at eight of the nine contiguous P6-P3' positions (residues 13-21), the exception being P3-Cys16 which is involved in a conserved disulfide bridge. Two-dimensional [1H,1H]-TOCSY data were collected for each variant as a function of sample pH. This allowed for the evaluation of 31 of the 32 pK(a) values for these residues, the exception being that of P5-Lys14, whose signals at high pH could not be resolved from those of other Lys residues in the molecule. Only two of the titrating residues are present in the wild-type protein (P6-Lys13 and P1'-Glu19); hence, these measurements complement earlier measurements by A. D. Robertson and co-workers. This data set was supplemented with results from the pH dependence of NMR spectra of four additional single mutants, P1-Leu18Gly, P1-Leu18Ala, P2-Thr17Val, and P3'-Arg21Ala, and two double mutants, P2-Thr17Val/P3'-Arg21Ala and P8-Tyr11Phe/P6-Lys13Asp. Probably the most striking result was observation of a P2-Thr17...P1'-Glu19 hydrogen bond and a P1'-Glu19-P3'-Arg21 electrostatic interaction within the triad of P2, P1', and P3' (residues 17, 19, and 21, respectively). In several cases, the pK(a) of a particular residue was sensed by resonances not only in that residue but also in residue(s) with which it interacts. Remarkably, in several interacting systems, resonances from different protons within the same residue yielded different pHmid values.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12627950     DOI: 10.1021/bi0269512

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  pH dependence of amide chemical shifts in natively disordered polypeptides detects medium-range interactions with ionizable residues.

Authors:  Mario Pujato; Clay Bracken; Romina Mancusso; Marcela Cataldi; María Luisa Tasayco
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

Review 2.  Progress in the prediction of pKa values in proteins.

Authors:  Emil Alexov; Ernest L Mehler; Nathan Baker; António M Baptista; Yong Huang; Francesca Milletti; Jens Erik Nielsen; Damien Farrell; Tommy Carstensen; Mats H M Olsson; Jana K Shen; Jim Warwicker; Sarah Williams; J Michael Word
Journal:  Proteins       Date:  2011-10-15

3.  pK(a) values for side-chain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability.

Authors:  Stina Lindman; Sara Linse; Frans A A Mulder; Ingemar André
Journal:  Biophys J       Date:  2006-10-13       Impact factor: 4.033

4.  NMR determination of pKa values in α-synuclein.

Authors:  Robyn L Croke; Sharadrao M Patil; Jason Quevreaux; Debra A Kendall; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2010-12-13       Impact factor: 6.725

5.  Biomolecular NMR: Past and future.

Authors:  John L Markley; William Milo Westler
Journal:  Arch Biochem Biophys       Date:  2017-05-08       Impact factor: 4.013

6.  Determination of lysine pK values using [5-13C]lysine: application to the lyase domain of DNA Pol beta.

Authors:  Guanghua Gao; Rajendra Prasad; Siegfried N Lodwig; Clifford J Unkefer; William A Beard; Samuel H Wilson; Robert E London
Journal:  J Am Chem Soc       Date:  2006-06-28       Impact factor: 15.419

7.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

8.  Intrinsically disordered inhibitor of glutamine synthetase is a functional protein with random-coil-like pKa values.

Authors:  Concetta Cozza; José L Neira; Francisco J Florencio; M Isabel Muro-Pastor; Bruno Rizzuti
Journal:  Protein Sci       Date:  2017-03-27       Impact factor: 6.725

9.  The structure of the cataract-causing P23T mutant of human gammaD-crystallin exhibits distinctive local conformational and dynamic changes.

Authors:  Jinwon Jung; In-Ja L Byeon; Yongting Wang; Jonathan King; Angela M Gronenborn
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

10.  Reproducing basic pKa values for turkey ovomucoid third domain using a polarizable force field.

Authors:  Timothy H Click; George A Kaminski
Journal:  J Phys Chem B       Date:  2009-06-04       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.