Literature DB >> 12620122

Genesis and evolution of the Evx and Mox genes and the extended Hox and ParaHox gene clusters.

Carolina Minguillón1, Jordi Garcia-Fernàndez.   

Abstract

BACKGROUND: Hox and ParaHox gene clusters are thought to have resulted from the duplication of a ProtoHox gene cluster early in metazoan evolution. However, the origin and evolution of the other genes belonging to the extended Hox group of homeobox-containing genes, that is, Mox and Evx, remains obscure. We constructed phylogenetic trees with mouse, amphioxus and Drosophila extended Hox and other related Antennapedia-type homeobox gene sequences and analyzed the linkage data available for such genes.
RESULTS: We claim that neither Mox nor Evx is a Hox or ParaHox gene. We propose a scenario that reconciles phylogeny with linkage data, in which an Evx/Mox ancestor gene linked to a ProtoHox cluster was involved in a segmental tandem duplication event that generated an array of all Hox-like genes, referred to as the 'coupled' cluster. A chromosomal breakage within this cluster explains the current composition of the extended Hox cluster (with Evx, Hox and Mox genes) and the ParaHox cluster.
CONCLUSIONS: Most studies dealing with the origin and evolution of Hox and ParaHox clusters have not included the Hox-related genes Mox and Evx. Our phylogenetic analyses and the available linkage data in mammalian genomes support an evolutionary scenario in which an ancestor of Evx and Mox was linked to the ProtoHox cluster, and that a tandem duplication of a large genomic region early in metazoan evolution generated the Hox and ParaHox clusters, plus the cluster-neighbors Evx and Mox. The large 'coupled' Hox-like cluster EvxHox/MoxParaHox was subsequently broken, thus grouping the Mox and Evx genes to the Hox clusters, and isolating the ParaHox cluster.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12620122      PMCID: PMC151302          DOI: 10.1186/gb-2003-4-2-r12

Source DB:  PubMed          Journal:  Genome Biol        ISSN: 1474-7596            Impact factor:   13.583


  20 in total

Review 1.  Ancient origin of the Hox gene cluster.

Authors:  D E Ferrier; P W Holland
Journal:  Nat Rev Genet       Date:  2001-01       Impact factor: 53.242

2.  Ancient origins of axial patterning genes: Hox genes and ParaHox genes in the Cnidaria.

Authors:  J R Finnerty; M Q Martindale
Journal:  Evol Dev       Date:  1999 Jul-Aug       Impact factor: 1.930

3.  Combined-method phylogenetic analysis of Hox and ParaHox genes of the metazoa.

Authors:  M J Kourakis; M Q Martindale
Journal:  J Exp Zool       Date:  2000-08-15

4.  MEGA2: molecular evolutionary genetics analysis software.

Authors:  S Kumar; K Tamura; I B Jakobsen; M Nei
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

5.  TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.

Authors:  Heiko A Schmidt; Korbinian Strimmer; Martin Vingron; Arndt von Haeseler
Journal:  Bioinformatics       Date:  2002-03       Impact factor: 6.937

6.  Genome duplication strikes back.

Authors:  Jürg Spring
Journal:  Nat Genet       Date:  2002-06       Impact factor: 38.330

7.  Evidence for 14 homeobox gene clusters in human genome ancestry.

Authors:  S L Pollard; P W Holland
Journal:  Curr Biol       Date:  2000-09-07       Impact factor: 10.834

8.  Analysis of mouse Evx genes: Evx-1 displays graded expression in the primitive streak.

Authors:  M K Dush; G R Martin
Journal:  Dev Biol       Date:  1992-05       Impact factor: 3.582

9.  The rapid generation of mutation data matrices from protein sequences.

Authors:  D T Jones; W R Taylor; J M Thornton
Journal:  Comput Appl Biosci       Date:  1992-06

10.  Evolution of Antp-class genes and differential expression of Hydra Hox/paraHox genes in anterior patterning.

Authors:  D Gauchat; F Mazet; C Berney; M Schummer; S Kreger; J Pawlowski; B Galliot
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

View more
  14 in total

1.  Gene duplication, gene loss and evolution of expression domains in the vertebrate nuclear receptor NR5A (Ftz-F1) family.

Authors:  Ming-Wei Kuo; John Postlethwait; Wen-Chih Lee; Show-Wan Lou; Woon-Khiong Chan; Bon-chu Chung
Journal:  Biochem J       Date:  2005-07-01       Impact factor: 3.857

2.  Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development.

Authors:  Tetsuro Ikuta; Natsue Yoshida; Nori Satoh; Hidetoshi Saiga
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-06       Impact factor: 11.205

3.  Expression of the pair-rule gene homologs runt, Pax3/7, even-skipped-1 and even-skipped-2 during larval and juvenile development of the polychaete annelid Capitella teleta does not support a role in segmentation.

Authors:  Elaine C Seaver; Emi Yamaguchi; Gemma S Richards; Néva P Meyer
Journal:  Evodevo       Date:  2012-04-18       Impact factor: 2.250

4.  No more than 14: the end of the amphioxus Hox cluster.

Authors:  Carolina Minguillón; Josep Gardenyes; Elisa Serra; L Filipe C Castro; Alicia Hill-Force; Peter W H Holland; Chris T Amemiya; Jordi Garcia-Fernàndez
Journal:  Int J Biol Sci       Date:  2005-01-05       Impact factor: 6.580

5.  Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis.

Authors:  Joseph F Ryan; Maureen E Mazza; Kevin Pang; David Q Matus; Andreas D Baxevanis; Mark Q Martindale; John R Finnerty
Journal:  PLoS One       Date:  2007-01-24       Impact factor: 3.240

6.  The Homeobox Genes of Caenorhabditis elegans and Insights into Their Spatio-Temporal Expression Dynamics during Embryogenesis.

Authors:  Jürgen Hench; Johan Henriksson; Akram M Abou-Zied; Martin Lüppert; Johan Dethlefsen; Krishanu Mukherjee; Yong Guang Tong; Lois Tang; Umesh Gangishetti; David L Baillie; Thomas R Bürglin
Journal:  PLoS One       Date:  2015-05-29       Impact factor: 3.240

7.  Are Hox genes ancestrally involved in axial patterning? Evidence from the hydrozoan Clytia hemisphaerica (Cnidaria).

Authors:  Roxane Chiori; Muriel Jager; Elsa Denker; Patrick Wincker; Corinne Da Silva; Hervé Le Guyader; Michaël Manuel; Eric Quéinnec
Journal:  PLoS One       Date:  2009-01-21       Impact factor: 3.240

8.  Genomic organization and expression demonstrate spatial and temporal Hox gene colinearity in the lophotrochozoan Capitella sp. I.

Authors:  Andreas C Fröbius; David Q Matus; Elaine C Seaver
Journal:  PLoS One       Date:  2008-12-23       Impact factor: 3.240

9.  Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

Authors:  Nicol Siegel; Simone Hoegg; Walter Salzburger; Ingo Braasch; Axel Meyer
Journal:  BMC Genomics       Date:  2007-09-06       Impact factor: 3.969

10.  The TALE face of Hox proteins in animal evolution.

Authors:  Samir Merabet; Brigitte Galliot
Journal:  Front Genet       Date:  2015-08-18       Impact factor: 4.599

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.