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Literature DB >> 12611813

Protein family annotation in a multiple alignment viewer.

Jason M Johnson¹, Keith Mason, Ciamac Moallemi, Hualin Xi, Shyamal Somaroo, Enoch S Huang.

Abstract

SUMMARY: The Pfaat protein family alignment annotation tool is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. The application merges display features such as dendrograms, secondary and tertiary protein structure with SRS retrieval, subgroup comparison, and extensive user-annotation capabilities. AVAILABILITY: The program and source code are freely available from the authors under the GNU General Public License at http://www.pfizerdtc.com

Mesh：

Substances：
Proteins

Year: 2003 PMID： 12611813 DOI： 10.1093/bioinformatics/btg021

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

18 in total

1. Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

Authors: Daniel R Caffrey; Shyamal Somaroo; Jason D Hughes; Julian Mintseris; Enoch S Huang
Journal: Protein Sci Date: 2004-01 Impact factor: 6.725

2. Construction of a sequence motif characteristic of aminergic G protein-coupled receptors.

Authors: Enoch S Huang
Journal: Protein Sci Date: 2003-07 Impact factor: 6.725

3. WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences.

Authors: Radek Zika; Jan Paces; Adam Pavlícek; Václav Paces
Journal: Nucleic Acids Res Date: 2004-07-01 Impact factor: 16.971

Protein family annotation in a multiple alignment viewer.

1. Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

2. Construction of a sequence motif characteristic of aminergic G protein-coupled receptors.

3. WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences.

4. Yeast Sec1p functions before and after vesicle docking.

5. Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

6. Probing the influence on folding behavior of structurally conserved core residues in P. aeruginosa apo-azurin.

7. Molecular evolution of multisubunit RNA polymerases: sequence analysis.

8. DWNN, a novel ubiquitin-like domain, implicates RBBP6 in mRNA processing and ubiquitin-like pathways.

9. Structural and functional diversity of the microbial kinome.

10. MultiSeq: unifying sequence and structure data for evolutionary analysis.