Literature DB >> 12610535

Molecular evolution meets the genomics revolution.

Kenneth H Wolfe1, Wen-Hsiung Li.   

Abstract

Changes in technology in the past decade have had such an impact on the way that molecular evolution research is done that it is difficult now to imagine working in a world without genomics or the Internet. In 1992, GenBank was less than a hundredth of its current size and was updated every three months on a huge spool of tape. Homology searches took 30 minutes and rarely found a hit. Now it is difficult to find sequences with only a few homologs to use as examples for teaching bioinformatics. For molecular evolution researchers, the genomics revolution has showered us with raw data and the information revolution has given us the wherewithal to analyze it. In broad terms, the most significant outcome from these changes has been our newfound ability to examine the evolution of genomes as a whole, enabling us to infer genome-wide evolutionary patterns and to identify subsets of genes whose evolution has been in some way atypical.

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Year:  2003        PMID: 12610535     DOI: 10.1038/ng1088

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  50 in total

1.  Phosphorylation of yeast transcription factors correlates with the evolution of novel sequence and function.

Authors:  Mark Kaganovich; Michael Snyder
Journal:  J Proteome Res       Date:  2011-12-09       Impact factor: 4.466

2.  Extensive gene gain associated with adaptive evolution of poxviruses.

Authors:  Aoife McLysaght; Pierre F Baldi; Brandon S Gaut
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-05       Impact factor: 11.205

3.  Adaptive evolution of MRG, a neuron-specific gene family implicated in nociception.

Authors:  Sun Shim Choi; Bruce T Lahn
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

4.  Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.

Authors:  Dmitri M Krylov; Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

5.  Positive selection on protein-length in the evolution of a primate sperm ion channel.

Authors:  Ondrej Podlaha; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-01       Impact factor: 11.205

6.  Genome evolution reveals biochemical networks and functional modules.

Authors:  Christian von Mering; Evgeny M Zdobnov; Sophia Tsoka; Francesca D Ciccarelli; Jose B Pereira-Leal; Christos A Ouzounis; Peer Bork
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

7.  Divergence in the spatial pattern of gene expression between human duplicate genes.

Authors:  Kateryna D Makova; Wen-Hsiung Li
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

8.  cis-Regulatory and protein evolution in orthologous and duplicate genes.

Authors:  Cristian I Castillo-Davis; Daniel L Hartl; Guillaume Achaz
Journal:  Genome Res       Date:  2004-07-15       Impact factor: 9.043

9.  Adaptive evolution of scorpion sodium channel toxins.

Authors:  Shunyi Zhu; Frank Bosmans; Jan Tytgat
Journal:  J Mol Evol       Date:  2004-02       Impact factor: 2.395

10.  Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris.

Authors:  Jer-Young Lin; Robert M Stupar; Christian Hans; David L Hyten; Scott A Jackson
Journal:  Plant Cell       Date:  2010-08-20       Impact factor: 11.277

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