Literature DB >> 12604796

The Tre2 (USP6) oncogene is a hominoid-specific gene.

Charles A Paulding1, Maryellen Ruvolo, Daniel A Haber.   

Abstract

Gene duplication and domain accretion are thought to be the major mechanisms for the emergence of novel genes during evolution. Such events are thought to have occurred at early stages in the vertebrate lineage, but genomic sequencing has recently revealed extensive amplification events during the evolution of higher primates. We report here that the Tre2 (USP6) oncogene is derived from the chimeric fusion of two genes, USP32 (NY-REN-60), and TBC1D3. USP32 is an ancient, highly conserved gene, whereas TBC1D3 is derived from a recent segmental duplication, which is absent in most other mammals and shows rapid amplification and dispersal through the primate lineage. Remarkably, the chimeric gene Tre2 exists only in the hominoid lineage of primates. This hominoid-specific oncogene arose as recently as 21-33 million years ago, after proliferation of the TBC1D3 segmental duplication in the primate lineage. In contrast to the broad expression pattern of USP32 and TBC1D3, expression of Tre2 is testis-specific, a pattern proposed for novel genes implicated in the emergence of reproductive barriers. The sudden emergence of chimeric proteins, such as that encoded by Tre2, may have contributed to hominoid speciation.

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Year:  2003        PMID: 12604796      PMCID: PMC151371          DOI: 10.1073/pnas.0437015100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

Review 2.  Recent duplication, domain accretion and the dynamic mutation of the human genome.

Authors:  E E Eichler
Journal:  Trends Genet       Date:  2001-11       Impact factor: 11.639

Review 3.  Sex gene pool evolution and speciation: a new paradigm.

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Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

5.  Rapid evolution of male reproductive genes in the descent of man.

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Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

6.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

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Journal:  Genome Res       Date:  2001-03       Impact factor: 9.043

8.  Birth of two chimeric genes in the Hominidae lineage.

Authors:  A Courseaux; J L Nahon
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

9.  The sequence of the human genome.

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Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

10.  Positive selection of a gene family during the emergence of humans and African apes.

Authors:  M E Johnson; L Viggiano; J A Bailey; M Abdul-Rauf; G Goodwin; M Rocchi; E E Eichler
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

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  61 in total

1.  A genomic analysis of rat proteases and protease inhibitors.

Authors:  Xose S Puente; Carlos López-Otín
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

Review 2.  Origins, evolution, and phenotypic impact of new genes.

Authors:  Henrik Kaessmann
Journal:  Genome Res       Date:  2010-07-22       Impact factor: 9.043

3.  Complex genomic rearrangements lead to novel primate gene function.

Authors:  Francesca D Ciccarelli; Christian von Mering; Mikita Suyama; Eoghan D Harrington; Elisa Izaurralde; Peer Bork
Journal:  Genome Res       Date:  2005-02-14       Impact factor: 9.043

4.  Rapid evolution of the trophoblast kunitz domain proteins (TKDPs)-a multigene family in ruminant ungulates.

Authors:  Anindita Chakrabarty; James A MacLean; Austin L Hughes; R Michael Roberts; Jonathan A Green
Journal:  J Mol Evol       Date:  2006-07-07       Impact factor: 2.395

5.  Recurrent duplication-driven transposition of DNA during hominoid evolution.

Authors:  Matthew E Johnson; Ze Cheng; V Anne Morrison; Steven Scherer; Mario Ventura; Richard A Gibbs; Eric D Green; Evan E Eichler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

6.  Identification of TCP10L as primate-specific gene derived via segmental duplication and homodimerization of TCP10L through the leucine zipper motif.

Authors:  Zhaomin Zhong; Jianping Qiu; Xinya Chen; Bo Wan; Jun Ni; Yun Yang; Meirong Bai; Haoxing Zhang; Long Yu
Journal:  Mol Biol Rep       Date:  2007-03-22       Impact factor: 2.316

7.  Evidence for involvement of TRE-2 (USP6) oncogene, low-copy repeat and acrocentric heterochromatin in two families with chromosomal translocations.

Authors:  Zhishuo Ou; Małgorzata Jarmuz; Steven P Sparagana; Jacques Michaud; Jean-Claude Décarie; Svetlana A Yatsenko; Beata Nowakowska; Patti Furman; Chad A Shaw; Lisa G Shaffer; James R Lupski; A Craig Chinault; Sau W Cheung; Paweł Stankiewicz
Journal:  Hum Genet       Date:  2006-06-22       Impact factor: 4.132

Review 8.  Evolution in health and medicine Sackler colloquium: Genomic disorders: a window into human gene and genome evolution.

Authors:  Claudia M B Carvalho; Feng Zhang; James R Lupski
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-13       Impact factor: 11.205

9.  Recent mammalian gene duplications: robust search for functionally divergent gene pairs.

Authors:  Austin L Hughes; Robert Friedman
Journal:  J Mol Evol       Date:  2004-07       Impact factor: 2.395

10.  Repeated evolution of testis-specific new genes: the case of telomere-capping genes in Drosophila.

Authors:  Raphaëlle Dubruille; Gabriel A B Marais; Benjamin Loppin
Journal:  Int J Evol Biol       Date:  2012-07-11
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