Literature DB >> 12600937

Identification of genes that protect the C. elegans genome against mutations by genome-wide RNAi.

Joris Pothof1, Gijs van Haaften, Karen Thijssen, Ravi S Kamath, Andrew G Fraser, Julie Ahringer, Ronald H A Plasterk, Marcel Tijsterman.   

Abstract

An RNA interference (RNAi)-based genome-wide screen was performed to detect genes that contribute to genome stability in somatic cells of Caenorhabditis elegans. We identified 61 such genes; these also affect spontaneous mutagenesis in the germ line. Their sequence suggests a role in DNA repair and/or replication, in chromatin remodeling, or in cell cycle control; there are also many novel genes that are highly conserved from yeast to human. Because known mutator genes are causally involved in many hereditary and sporadic human cancers, it is likely that some of these new mutators are equally relevant in cancer etiology.

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Year:  2003        PMID: 12600937      PMCID: PMC195995          DOI: 10.1101/gad.1060703

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  24 in total

1.  A global profile of germline gene expression in C. elegans.

Authors:  V Reinke; H E Smith; J Nance; J Wang; C Van Doren; R Begley; S J Jones; E B Davis; S Scherer; S Ward; S K Kim
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

2.  Functional genomic analysis of C. elegans chromosome I by systematic RNA interference.

Authors:  A G Fraser; R S Kamath; P Zipperlen; M Martinez-Campos; M Sohrmann; J Ahringer
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

3.  Gcn4 activator targets Gcn5 histone acetyltransferase to specific promoters independently of transcription.

Authors:  M H Kuo; E vom Baur; K Struhl; C D Allis
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

4.  Specific interference by ingested dsRNA.

Authors:  L Timmons; A Fire
Journal:  Nature       Date:  1998-10-29       Impact factor: 49.962

Review 5.  A mutator phenotype in cancer.

Authors:  L A Loeb
Journal:  Cancer Res       Date:  2001-04-15       Impact factor: 12.701

Review 6.  Poly(APD-ribosyl)ation, a DNA damage-driven protein modification and regulator of genomic instability.

Authors:  A Bürkle
Journal:  Cancer Lett       Date:  2001-02-10       Impact factor: 8.679

7.  Nucleotide excision repair of DNA with recombinant human proteins: definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK.

Authors:  S J Araújo; F Tirode; F Coin; H Pospiech; J E Syväoja; M Stucki; U Hübscher; J M Egly; R D Wood
Journal:  Genes Dev       Date:  2000-02-01       Impact factor: 11.361

Review 8.  Translesion synthesis by the UmuC family of DNA polymerases.

Authors:  Z Wang
Journal:  Mutat Res       Date:  2001-07-12       Impact factor: 2.433

9.  Combined functional genomic maps of the C. elegans DNA damage response.

Authors:  Simon J Boulton; Anton Gartner; Jérôme Reboul; Philippe Vaglio; Nick Dyson; David E Hill; Marc Vidal
Journal:  Science       Date:  2002-01-04       Impact factor: 47.728

10.  Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans.

Authors:  R S Kamath; M Martinez-Campos; P Zipperlen; A G Fraser; J Ahringer
Journal:  Genome Biol       Date:  2000-12-20       Impact factor: 13.583

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  82 in total

1.  Genome-scale functional profiling of the mammalian AP-1 signaling pathway.

Authors:  Sumit K Chanda; Suhaila White; Anthony P Orth; Richard Reisdorph; Loren Miraglia; Russell S Thomas; Paul DeJesus; Daniel E Mason; Qihong Huang; Raquel Vega; De-Hua Yu; Christian G Nelson; Brendan M Smith; Robert Terry; Alicia S Linford; Yang Yu; Gung-wei Chirn; Chuanzheng Song; Mark A Labow; Dalia Cohen; Frederick J King; Eric C Peters; Peter G Schultz; Peter K Vogt; John B Hogenesch; Jeremy S Caldwell
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-26       Impact factor: 11.205

2.  Linking histone deacetylation with the repair of DNA breaks.

Authors:  Oscar Fernandez-Capetillo; Andre Nussenzweig
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-02       Impact factor: 11.205

3.  Saccharomyces cerevisiae Sin3p facilitates DNA double-strand break repair.

Authors:  Ali Jazayeri; Andrew D McAinsh; Stephen P Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-07       Impact factor: 11.205

4.  Quantitative analysis of highly parallel transfection in cell microarrays.

Authors:  Sandrine Baghdoyan; Yoann Roupioz; Amandine Pitaval; David Castel; Elena Khomyakova; Alexandre Papine; Françoise Soussaline; Xavier Gidrol
Journal:  Nucleic Acids Res       Date:  2004-05-21       Impact factor: 16.971

5.  DEQOR: a web-based tool for the design and quality control of siRNAs.

Authors:  Andreas Henschel; Frank Buchholz; Bianca Habermann
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

6.  RNA interference microarrays: high-throughput loss-of-function genetics in mammalian cells.

Authors:  Jose M Silva; Hana Mizuno; Amy Brady; Robert Lucito; Gregory J Hannon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-14       Impact factor: 11.205

Review 7.  RNA interference technologies for understanding and treating neurodegenerative diseases.

Authors:  Bingwei Lu
Journal:  Neuromolecular Med       Date:  2004       Impact factor: 3.843

8.  Transcriptional silencing of a transgene by RNAi in the soma of C. elegans.

Authors:  Alla Grishok; Jina L Sinskey; Phillip A Sharp
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

9.  An approach to genomewide screens of expressed small interfering RNAs in mammalian cells.

Authors:  Lianxing Zheng; Jun Liu; Sergei Batalov; Demin Zhou; Anthony Orth; Sheng Ding; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-19       Impact factor: 11.205

10.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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