Literature DB >> 12590122

Assessment of 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana.

Jane L Ward1, Cassandra Harris, Jennie Lewis, Michael H Beale.   

Abstract

An approach to metabolite fingerprinting of crude plant extracts that utilizes 1H nuclear magnetic resonance (NMR) spectroscopy and multivariate statistics has been tested. Using ecotypes of Arabidopsis thaliana as experimental material, a method has been developed for the rapid analysis of unfractionated polar plant extracts, enabling the creation of reproducible metabolite fingerprints. These fingerprints could be readily stored and compared by a variety of chemometric methods. Comparison by principal component analysis using SIMCA-P allowed the generation of residual NMR spectra of the compounds that contributed significantly to the differences between samples. From these plots, conclusions were drawn with respect to the identity and relative levels of metabolites differing between samples.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12590122     DOI: 10.1016/s0031-9422(02)00705-7

Source DB:  PubMed          Journal:  Phytochemistry        ISSN: 0031-9422            Impact factor:   4.072


  37 in total

1.  Predicting interpretability of metabolome models based on behavior, putative identity, and biological relevance of explanatory signals.

Authors:  David P Enot; Manfred Beckmann; David Overy; John Draper
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-21       Impact factor: 11.205

2.  Amino acid metabolism at the maternal-filial boundary of young barley seeds: a microdissection-based study.

Authors:  Johannes Thiel; Martin Müller; Winfriede Weschke; Hans Weber
Journal:  Planta       Date:  2009-05-05       Impact factor: 4.116

3.  A rapid, simple method for the genetic discrimination of intact Arabidopsis thaliana mutant seeds using metabolic profiling by direct analysis in real-time mass spectrometry.

Authors:  Suk Weon Kim; Hye Jin Kim; Jong Hyun Kim; Yong Kook Kwon; Myung Suk Ahn; Young Pyo Jang; Jang R Liu
Journal:  Plant Methods       Date:  2011-06-10       Impact factor: 4.993

4.  Metabolic footprint analysis of metabolites that discriminate single and mixed yeast cultures at two key time-points during mixed culture alcoholic fermentations.

Authors:  Chuantao Peng; Tiago Viana; Mikael Agerlin Petersen; Flemming Hofmann Larsen; Nils Arneborg
Journal:  Metabolomics       Date:  2018-07-04       Impact factor: 4.290

Review 5.  NMR analysis of plant nitrogen metabolism.

Authors:  F Mesnard; R G Ratcliffe
Journal:  Photosynth Res       Date:  2005       Impact factor: 3.573

6.  An inter-laboratory comparison demonstrates that [H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection.

Authors:  Jane L Ward; John M Baker; Sonia J Miller; Catherine Deborde; Mickael Maucourt; Benoit Biais; Dominique Rolin; Annick Moing; Sofia Moco; Jacques Vervoort; Arjen Lommen; Hartmut Schäfer; Eberhard Humpfer; Michael H Beale
Journal:  Metabolomics       Date:  2010-02-27       Impact factor: 4.290

7.  Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis.

Authors:  Elizabeth Allen; Annick Moing; Timothy Md Ebbels; Mickaël Maucourt; A Deri Tomos; Dominique Rolin; Mark A Hooks
Journal:  BMC Syst Biol       Date:  2010-05-13

8.  Metabotyping of Caenorhabditis elegans reveals latent phenotypes.

Authors:  Benjamin J Blaise; Jean Giacomotto; Bénédicte Elena; Marc-Emmanuel Dumas; Pierre Toulhoat; Laurent Ségalat; Lyndon Emsley
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-05       Impact factor: 11.205

9.  Metabolic discrimination of Catharanthus roseus leaves infected by phytoplasma using 1H-NMR spectroscopy and multivariate data analysis.

Authors:  Young Hae Choi; Elisabet Casas Tapias; Hye Kyong Kim; Alfons W M Lefeber; Cornelis Erkelens; Jacobus Th J Verhoeven; Jernej Brzin; Jana Zel; Robert Verpoorte
Journal:  Plant Physiol       Date:  2004-07-30       Impact factor: 8.340

10.  Measurement of dietary exposure: a challenging problem which may be overcome thanks to metabolomics?

Authors:  Gaëlle Favé; M E Beckmann; J H Draper; J C Mathers
Journal:  Genes Nutr       Date:  2009-04-02       Impact factor: 5.523

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.