Literature DB >> 12581667

Evolutionary aspects of protein structure and folding.

Edward N Trifonov1, Igor N Berezovsky.   

Abstract

The traditional reconstruction of molecular events of the past based on sequence conservation becomes very vague beyond one to two billion years ago. There are certain molecular features, however, such as polymer flexibility and loop closure, that are conserved merely because of their physical nature. This allows one to penetrate the earliest stages of protein evolution.

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Year:  2003        PMID: 12581667     DOI: 10.1016/s0959-440x(03)00005-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  13 in total

1.  Self-inflicted fear of evolution.

Authors:  Edward N Trifonov
Journal:  Orig Life Evol Biosph       Date:  2006-12       Impact factor: 1.950

2.  Protein modules conserved since LUCA.

Authors:  Yehoshua Sobolevsky; Edward N Trifonov
Journal:  J Mol Evol       Date:  2006-10-29       Impact factor: 2.395

3.  Combinations of ancestral modules in proteins.

Authors:  Yehoshua Sobolevsky; Zakharia M Frenkel; Edward N Trifonov
Journal:  J Mol Evol       Date:  2007-11-20       Impact factor: 2.395

4.  Functional states of homooligomers: insights from the evolution of glycosyltransferases.

Authors:  Kosuke Hashimoto; Thomas Madej; Stephen H Bryant; Anna R Panchenko
Journal:  J Mol Biol       Date:  2010-04-08       Impact factor: 5.469

5.  Prototypes of elementary functional loops unravel evolutionary connections between protein functions.

Authors:  Alexander Goncearenco; Igor N Berezovsky
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

6.  A protein domain-based interactome network for C. elegans early embryogenesis.

Authors:  Mike Boxem; Zoltan Maliga; Niels Klitgord; Na Li; Irma Lemmens; Miyeko Mana; Lorenzo de Lichtervelde; Joram D Mul; Diederik van de Peut; Maxime Devos; Nicolas Simonis; Muhammed A Yildirim; Murat Cokol; Huey-Ling Kao; Anne-Sophie de Smet; Haidong Wang; Anne-Lore Schlaitz; Tong Hao; Stuart Milstein; Changyu Fan; Mike Tipsword; Kevin Drew; Matilde Galli; Kahn Rhrissorrakrai; David Drechsel; Daphne Koller; Frederick P Roth; Lilia M Iakoucheva; A Keith Dunker; Richard Bonneau; Kristin C Gunsalus; David E Hill; Fabio Piano; Jan Tavernier; Sander van den Heuvel; Anthony A Hyman; Marc Vidal
Journal:  Cell       Date:  2008-08-08       Impact factor: 41.582

7.  Exploring the evolution of protein function in Archaea.

Authors:  Alexander Goncearenco; Igor N Berezovsky
Journal:  BMC Evol Biol       Date:  2012-05-30       Impact factor: 3.260

8.  mRNA 3' end processing factors: a phylogenetic comparison.

Authors:  Sarah K Darmon; Carol S Lutz
Journal:  Comp Funct Genomics       Date:  2012-02-06

9.  ProteinVolume: calculating molecular van der Waals and void volumes in proteins.

Authors:  Calvin R Chen; George I Makhatadze
Journal:  BMC Bioinformatics       Date:  2015-03-26       Impact factor: 3.169

10.  Pokefind: a novel topological filter for use with protein structure prediction.

Authors:  Firas Khatib; Carol A Rohl; Kevin Karplus
Journal:  Bioinformatics       Date:  2009-06-15       Impact factor: 6.937

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