Literature DB >> 12581658

Eukaryotic transcriptional regulatory complexes: cooperativity from near and afar.

Kazuhiro Ogata1, Ko Sato, Tahir H Tahirov, Tahir Tahirov.   

Abstract

It is characteristic of eukaryotic transcription that a unique combination of multiple transcriptional regulatory proteins bound to promoter DNA specifically activate or repress downstream target genes; this is referred to as combinatorial gene regulation. Recently determined structures have revealed different modes of protein-protein interaction on the promoter DNA from near (e.g. the Runx1-CBFbeta-DNA, NFAT-Fos-Jun-DNA, GABPalpha-GABPbeta-DNA, Ets-1-Pax-5-DNA and PU.1-IRF-4-DNA complexes) and afar with DNA looping (e.g. the c-Myb-C/EBPbeta-DNA complex), and their regulatory mechanisms.

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Year:  2003        PMID: 12581658     DOI: 10.1016/s0959-440x(03)00012-5

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  37 in total

1.  Conformations and dynamics of Ets-1 ETS domain-DNA complexes.

Authors:  Swarnalatha Y Reddy; Satoshi Obika; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

2.  Inhibition of the NFAT pathway alleviates amyloid β neurotoxicity in a mouse model of Alzheimer's disease.

Authors:  Eloise Hudry; Hai-Yan Wu; Michal Arbel-Ornath; Tadafumi Hashimoto; Roland Matsouaka; Zhanyun Fan; Tara L Spires-Jones; Rebecca A Betensky; Brian J Bacskai; Bradley T Hyman
Journal:  J Neurosci       Date:  2012-02-29       Impact factor: 6.167

3.  Statistical-mechanical theory of DNA looping.

Authors:  Yongli Zhang; Abbye E McEwen; Donald M Crothers; Stephen D Levene
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

Review 4.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

5.  Probability of the site juxtaposition determines the rate of protein-mediated DNA looping.

Authors:  Yury S Polikanov; Vladimir A Bondarenko; Vladimir Tchernaenko; Yong I Jiang; Leonard C Lutter; Alexander Vologodskii; Vasily M Studitsky
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

Review 6.  Epigenetic mechanisms and developmental choice hierarchies in T-lymphocyte development.

Authors:  Ellen V Rothenberg
Journal:  Brief Funct Genomics       Date:  2013-08-06       Impact factor: 4.241

7.  Transposon-free regions in mammalian genomes.

Authors:  Cas Simons; Michael Pheasant; Igor V Makunin; John S Mattick
Journal:  Genome Res       Date:  2005-12-19       Impact factor: 9.043

8.  A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.

Authors:  Ruiqin Zhong; Chanhui Lee; Jianli Zhou; Ryan L McCarthy; Zheng-Hua Ye
Journal:  Plant Cell       Date:  2008-10-24       Impact factor: 11.277

Review 9.  The importance of being flexible: the case of basic region leucine zipper transcriptional regulators.

Authors:  Maria Miller
Journal:  Curr Protein Pept Sci       Date:  2009-06       Impact factor: 3.272

10.  NFAT-3 is a transcriptional repressor of the growth-associated protein 43 during neuronal maturation.

Authors:  Tuan Nguyen; Ricco Lindner; Andrea Tedeschi; Kirsi Forsberg; Andrew Green; Anja Wuttke; Perrine Gaub; Simone Di Giovanni
Journal:  J Biol Chem       Date:  2009-05-14       Impact factor: 5.157

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