Literature DB >> 12554867

The enhancer of decapping proteins, Edc1p and Edc2p, bind RNA and stimulate the activity of the decapping enzyme.

David Schwartz1, Carolyn J Decker, Roy Parker.   

Abstract

A major pathway of eukaryotic mRNA turnover initiates with deadenylation, which allows a decapping reaction leading to 5'-3' exonucleolytic degradation. A key control point in this pathway is the decapping of the mRNA. Two proteins, Edc1 and Edc2, were genetically identified previously as enhancers of the decapping reaction. In this work, we demonstrate that Edc1p and Edc2p are RNA-binding proteins. In addition, recombinant Edc1p or Edc2p stimulates mRNA decapping in cell-free extracts or with purified decapping enzyme. These results suggest that Edc1p and Edc2p activate decapping directly by binding to the mRNA substrate and enhancing the activity of the decapping enzyme. Interestingly, edc1Delta strains show defects in utilization of glycerol as a carbon source and misregulation of several mRNAs in response to carbon-source changes. This identifies a critical role for decapping and Edc1p in alterations of gene expression in response to carbon-source changes.

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Year:  2003        PMID: 12554867      PMCID: PMC1370390          DOI: 10.1261/rna.2171203

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  39 in total

Review 1.  The cap-to-tail guide to mRNA turnover.

Authors:  C J Wilusz; M Wormington; S W Peltz
Journal:  Nat Rev Mol Cell Biol       Date:  2001-04       Impact factor: 94.444

Review 2.  Regulation of mRNA stability in mammalian cells.

Authors:  J Guhaniyogi; G Brewer
Journal:  Gene       Date:  2001-03-07       Impact factor: 3.688

3.  mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E.

Authors:  D C Schwartz; R Parker
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

4.  A Sm-like protein complex that participates in mRNA degradation.

Authors:  E Bouveret; G Rigaut; A Shevchenko; M Wilm; B Séraphin
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

5.  The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast.

Authors:  W Olivas; R Parker
Journal:  EMBO J       Date:  2000-12-01       Impact factor: 11.598

6.  The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif.

Authors:  T Dunckley; R Parker
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

7.  Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae.

Authors:  T Dunckley; M Tucker; R Parker
Journal:  Genetics       Date:  2001-01       Impact factor: 4.562

8.  Glucose-regulated turnover of mRNA and the influence of poly(A) tail length on half-life.

Authors:  S Prieto; B J de la Cruz; I E Scheffler
Journal:  J Biol Chem       Date:  2000-05-12       Impact factor: 5.157

9.  The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1p.

Authors:  C Bonnerot; R Boeck; B Lapeyre
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

10.  The eukaryotic mRNA decapping protein Dcp1 interacts physically and functionally with the eIF4F translation initiation complex.

Authors:  C Vilela; C Velasco; M Ptushkina; J E McCarthy
Journal:  EMBO J       Date:  2000-08-15       Impact factor: 11.598

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  41 in total

Review 1.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

2.  Dcp1 links coactivators of mRNA decapping to Dcp2 by proline recognition.

Authors:  Mark S Borja; Kirill Piotukh; Christian Freund; John D Gross
Journal:  RNA       Date:  2010-12-10       Impact factor: 4.942

3.  The yeast EDC1 mRNA undergoes deadenylation-independent decapping stimulated by Not2p, Not4p, and Not5p.

Authors:  Denise Muhlrad; Roy Parker
Journal:  EMBO J       Date:  2005-02-10       Impact factor: 11.598

4.  The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs.

Authors:  Ashis Chowdhury; Jaba Mukhopadhyay; Sundaresan Tharun
Journal:  RNA       Date:  2007-05-18       Impact factor: 4.942

5.  Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3' end protection.

Authors:  Sundaresan Tharun; Denise Muhlrad; Ashis Chowdhury; Roy Parker
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

Review 6.  mRNA decapping: finding the right structures.

Authors:  Clément Charenton; Marc Graille
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

7.  Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.

Authors:  Eugene Valkov; Sowndarya Muthukumar; Chung-Te Chang; Stefanie Jonas; Oliver Weichenrieder; Elisa Izaurralde
Journal:  Nat Struct Mol Biol       Date:  2016-05-16       Impact factor: 15.369

8.  Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae.

Authors:  Yuriko Harigaya; Brittnee N Jones; Denise Muhlrad; John D Gross; Roy Parker
Journal:  Mol Cell Biol       Date:  2010-01-19       Impact factor: 4.272

9.  Biomaterials for mRNA delivery.

Authors:  Mohammad Ariful Islam; Emma K G Reesor; Yingjie Xu; Harshal R Zope; Bruce R Zetter; Jinjun Shi
Journal:  Biomater Sci       Date:  2015-08-17       Impact factor: 6.843

Review 10.  Structural and functional control of the eukaryotic mRNA decapping machinery.

Authors:  Marcos Arribas-Layton; Donghui Wu; Jens Lykke-Andersen; Haiwei Song
Journal:  Biochim Biophys Acta       Date:  2012-12-31
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