Literature DB >> 12552139

Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling.

I Swameye1, T G Muller, J Timmer, O Sandra, U Klingmuller.   

Abstract

Considerable progress has been made in identifying the molecular composition of complex signaling networks controlling cell proliferation, differentiation, and survival. However, to discover general building principles and predict the dynamic behavior of signaling networks, it is necessary to develop quantitative models based on experimental observations. Here we report a mathematical model of the core module of the Janus family of kinases (JAK)-signal transducer and activator of transcription (STAT) signaling pathway based on time-resolved measurements of receptor and STAT5 phosphorylation. Applying the fitted model, we can determine the quantitative behavior of STAT5 populations not accessible to experimental measurement. By in silico investigations, we identify the parameters of nuclear shuttling as the most sensitive to perturbations and verify experimentally the model prediction that inhibition of nuclear export results in a reduced transcriptional yield. The model reveals that STAT5 undergoes rapid nucleocytoplasmic cycles, continuously coupling receptor activation and target gene transcription, thereby forming a remote sensor between nucleus and receptor. Thus, dynamic modeling of signaling pathways can promote functional understanding at the systems level.

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Year:  2003        PMID: 12552139      PMCID: PMC298720          DOI: 10.1073/pnas.0237333100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

Review 1.  Negative regulation of the JAK/STAT pathway.

Authors:  R Starr; D J Hilton
Journal:  Bioessays       Date:  1999-01       Impact factor: 4.345

Review 2.  STAT proteins and transcriptional responses to extracellular signals.

Authors:  C M Horvath
Journal:  Trends Biochem Sci       Date:  2000-10       Impact factor: 13.807

Review 3.  Cell signaling by receptor tyrosine kinases.

Authors:  J Schlessinger
Journal:  Cell       Date:  2000-10-13       Impact factor: 41.582

4.  A mathematical model of caspase function in apoptosis.

Authors:  M Fussenegger; J E Bailey; J Varner
Journal:  Nat Biotechnol       Date:  2000-07       Impact factor: 54.908

5.  Nucleocytoplasmic translocation of Stat1 is regulated by a leucine-rich export signal in the coiled-coil domain.

Authors:  A Begitt; T Meyer; M van Rossum; U Vinkemeier
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

6.  Regulation of interferon-gamma-activated STAT1 by the ubiquitin-proteasome pathway.

Authors:  T K Kim; T Maniatis
Journal:  Science       Date:  1996-09-20       Impact factor: 47.728

7.  Leptomycin B inactivates CRM1/exportin 1 by covalent modification at a cysteine residue in the central conserved region.

Authors:  N Kudo; N Matsumori; H Taoka; D Fujiwara; E P Schreiner; B Wolff; M Yoshida; S Horinouchi
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

8.  Phosphorylation of erythropoietin receptors in the endoplasmic reticulum by pervanadate-mediated inhibition of tyrosine phosphatases.

Authors:  J Cohen; H Altaratz; Y Zick; U Klingmüller; D Neumann
Journal:  Biochem J       Date:  1997-10-15       Impact factor: 3.857

9.  Stat5B shuttles between cytoplasm and nucleus in a cytokine-dependent and -independent manner.

Authors:  Rong Zeng; Yutaka Aoki; Minoru Yoshida; Ken-ichi Arai; Sumiko Watanabe
Journal:  J Immunol       Date:  2002-05-01       Impact factor: 5.422

10.  A novel cytokine-inducible gene CIS encodes an SH2-containing protein that binds to tyrosine-phosphorylated interleukin 3 and erythropoietin receptors.

Authors:  A Yoshimura; T Ohkubo; T Kiguchi; N A Jenkins; D J Gilbert; N G Copeland; T Hara; A Miyajima
Journal:  EMBO J       Date:  1995-06-15       Impact factor: 11.598

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  84 in total

Review 1.  Triple-negative breast cancer: present challenges and new perspectives.

Authors:  Franca Podo; Lutgarde M C Buydens; Hadassa Degani; Riet Hilhorst; Edda Klipp; Ingrid S Gribbestad; Sabine Van Huffel; Hanneke W M van Laarhoven; Jan Luts; Daniel Monleon; Geert J Postma; Nicole Schneiderhan-Marra; Filippo Santoro; Hans Wouters; Hege G Russnes; Therese Sørlie; Elda Tagliabue; Anne-Lise Børresen-Dale
Journal:  Mol Oncol       Date:  2010-04-24       Impact factor: 6.603

2.  Parameter estimation in biochemical pathways: a comparison of global optimization methods.

Authors:  Carmen G Moles; Pedro Mendes; Julio R Banga
Journal:  Genome Res       Date:  2003-10-14       Impact factor: 9.043

3.  Mathematical modeling reveals threshold mechanism in CD95-induced apoptosis.

Authors:  M Bentele; I Lavrik; M Ulrich; S Stösser; D W Heermann; H Kalthoff; P H Krammer; R Eils
Journal:  J Cell Biol       Date:  2004-09-13       Impact factor: 10.539

4.  A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions.

Authors:  Andreas Kremling; Sophia Fischer; Kapil Gadkar; Francis J Doyle; Thomas Sauter; Eric Bullinger; Frank Allgöwer; Ernst D Gilles
Journal:  Genome Res       Date:  2004-09       Impact factor: 9.043

5.  Identification of optimal drug combinations targeting cellular networks: integrating phospho-proteomics and computational network analysis.

Authors:  Sergio Iadevaia; Yiling Lu; Fabiana C Morales; Gordon B Mills; Prahlad T Ram
Journal:  Cancer Res       Date:  2010-07-19       Impact factor: 12.701

Review 6.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

7.  Complex systems biology approach to understanding coordination of JAK-STAT signaling.

Authors:  Radina P Soebiyanto; Sree N Sreenath; Cheng-Kui Qu; Kenneth A Loparo; Kevin D Bunting
Journal:  Biosystems       Date:  2007-06-14       Impact factor: 1.973

8.  Simulation-based model selection for dynamical systems in systems and population biology.

Authors:  Tina Toni; Michael P H Stumpf
Journal:  Bioinformatics       Date:  2009-10-29       Impact factor: 6.937

9.  Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data.

Authors:  Paul D W Kirk; Michael P H Stumpf
Journal:  Bioinformatics       Date:  2009-03-16       Impact factor: 6.937

10.  Systematic identifiability testing for unambiguous mechanistic modeling--application to JAK-STAT, MAP kinase, and NF-kappaB signaling pathway models.

Authors:  Tom Quaiser; Martin Mönnigmann
Journal:  BMC Syst Biol       Date:  2009-05-09
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