Literature DB >> 12548630

Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications.

Adam J Liska1, Andrej Shevchenko.   

Abstract

Due to the limited applicability of conventional protein identification methods to the proteomes of organisms with unsequenced genomes, researchers have developed approaches to identify proteins using mass spectrometry and sequence similarity database searches. Both the integration of mass spectrometry with bioinformatics and genomic sequencing drive the expanding organismal scope of proteomics.

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Year:  2003        PMID: 12548630     DOI: 10.1002/pmic.200390004

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  33 in total

1.  The effects of chronic treatment with mood stabilizers on the rat hippocampal post-synaptic density proteome.

Authors:  Dhaval Nanavati; Daniel R Austin; Lisa A Catapano; David A Luckenbaugh; Ayse Dosemeci; Husseini K Manji; Guang Chen; Sanford P Markey
Journal:  J Neurochem       Date:  2011-09-21       Impact factor: 5.372

2.  Defining parameters for homology-tolerant database searching.

Authors:  J P Kayser; J L Vallet; R L Cerny
Journal:  J Biomol Tech       Date:  2004-12

3.  Secretome of the Coprophilous Fungus Doratomyces stemonitis C8, Isolated from Koala Feces.

Authors:  Robyn Peterson; Jasmine Grinyer; Helena Nevalainen
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

4.  Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification.

Authors:  Magno Junqueira; Victor Spirin; Tiago Santana Balbuena; Patrice Waridel; Vineeth Surendranath; Grigoriy Kryukov; Ivan Adzhubei; Henrik Thomas; Shamil Sunyaev; Andrej Shevchenko
Journal:  J Proteome Res       Date:  2008-06-18       Impact factor: 4.466

5.  A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins.

Authors:  M Cilia; T Fish; X Yang; M McLaughlin; T W Thannhauser; S Gray
Journal:  J Biomol Tech       Date:  2009-09

6.  Tandem mass spectrometry for the detection of plant pathogenic fungi and the effects of database composition on protein inferences.

Authors:  Neerav D Padliya; Wesley M Garrett; Kimberly B Campbell; David L Tabb; Bret Cooper
Journal:  Proteomics       Date:  2007-11       Impact factor: 3.984

7.  Identification of outer membrane proteins from an Antarctic bacterium Pseudomonas syringae Lz4W.

Authors:  M V Jagannadham; Ehab F Abou-Eladab; Heramb M Kulkarni
Journal:  Mol Cell Proteomics       Date:  2011-03-29       Impact factor: 5.911

Review 8.  A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.

Authors:  Alexey I Nesvizhskii
Journal:  J Proteomics       Date:  2010-09-08       Impact factor: 4.044

9.  Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics.

Authors:  Adam J Liska; Andrej Shevchenko; Uri Pick; Adriana Katz
Journal:  Plant Physiol       Date:  2004-08-27       Impact factor: 8.340

10.  Biomarker discovery in animal health and disease: the application of post-genomic technologies.

Authors:  Rowan E Moore; Jennifer Kirwan; Mary K Doherty; Phillip D Whitfield
Journal:  Biomark Insights       Date:  2007-07-10
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