Literature DB >> 26749496

Structural and functional features of the NAD(P) dependent Gfo/Idh/MocA protein family oxidoreductases.

Helena Taberman1, Tarja Parkkinen1, Juha Rouvinen1.   

Abstract

The Gfo/Idh/MocA protein family contains a number of different proteins, which almost exclusively consist of NAD(P)-dependent oxidoreductases that have a diverse set of substrates, typically pyranoses. In this study, to clarify common structural features that would contribute to their function, the available crystal structures of the members of this family have been analyzed. Despite a very low sequence identity, the central features of the three-dimensional structures of the proteins are surprisingly similar. The members of the protein family have a two-domain structure consisting of a N-terminal nucleotide-binding domain and a C-terminal α/β-domain. The C-terminal domain contributes to the substrate binding and catalysis, and contains a βα-motif with a central α-helix carrying common essential amino acid residues. The β-sheet of the α/β-domain contributes to the oligomerization in most of the proteins in the family.
© 2016 The Protein Society.

Entities:  

Keywords:  Gfo/Idh/MocA; NAD(P); oxidoreductase; pyranose

Mesh:

Substances:

Year:  2016        PMID: 26749496      PMCID: PMC4941211          DOI: 10.1002/pro.2877

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

1.  Announcing the worldwide Protein Data Bank.

Authors:  Helen Berman; Kim Henrick; Haruki Nakamura
Journal:  Nat Struct Biol       Date:  2003-12

2.  Comparison of super-secondary structures in proteins.

Authors:  S T Rao; M G Rossmann
Journal:  J Mol Biol       Date:  1973-05-15       Impact factor: 5.469

3.  Structural and mutational studies on the unusual substrate specificity of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum.

Authors:  Weidong Liu; Zhe Li; Chun-Hsiang Huang; Rey-Ting Guo; Leiming Zhao; Dalong Zhang; Xi Chen; Qiaqing Wu; Dunming Zhu
Journal:  Chembiochem       Date:  2013-12-11       Impact factor: 3.164

4.  Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Authors:  H Tettelin; K E Nelson; I T Paulsen; J A Eisen; T D Read; S Peterson; J Heidelberg; R T DeBoy; D H Haft; R J Dodson; A S Durkin; M Gwinn; J F Kolonay; W C Nelson; J D Peterson; L A Umayam; O White; S L Salzberg; M R Lewis; D Radune; E Holtzapple; H Khouri; A M Wolf; T R Utterback; C L Hansen; L A McDonald; T V Feldblyum; S Angiuoli; T Dickinson; E K Hickey; I E Holt; B J Loftus; F Yang; H O Smith; J C Venter; B A Dougherty; D A Morrison; S K Hollingshead; C M Fraser
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

5.  Characterization of a unique Caulobacter crescentus aldose-aldose oxidoreductase having dual activities.

Authors:  Martina Andberg; Hannu Maaheimo; Esa-Pekka Kumpula; Harry Boer; Mervi Toivari; Merja Penttilä; Anu Koivula
Journal:  Appl Microbiol Biotechnol       Date:  2015-10-01       Impact factor: 4.813

6.  Crystal structure of rat biliverdin reductase.

Authors:  A Kikuchi; S Y Park; H Miyatake; D Sun; M Sato; T Yoshida; Y Shiro
Journal:  Nat Struct Biol       Date:  2001-03

7.  The structure of glucose-fructose oxidoreductase from Zymomonas mobilis: an osmoprotective periplasmic enzyme containing non-dissociable NADP.

Authors:  R L Kingston; R K Scopes; E N Baker
Journal:  Structure       Date:  1996-12-15       Impact factor: 5.006

8.  Crystal structure of a biliverdin IXalpha reductase enzyme-cofactor complex.

Authors:  Frank G Whitby; John D Phillips; Christopher P Hill; William McCoubrey; Mahin D Maines
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

9.  Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643.

Authors:  Zhiru Yang; Alexei Savchenko; Alexander Yakunin; Rongguang Zhang; Aled Edwards; Cheryl Arrowsmith; Liang Tong
Journal:  J Biol Chem       Date:  2002-12-21       Impact factor: 5.157

10.  The three-dimensional structure of glucose 6-phosphate dehydrogenase from Leuconostoc mesenteroides refined at 2.0 A resolution.

Authors:  P Rowland; A K Basak; S Gover; H R Levy; M J Adams
Journal:  Structure       Date:  1994-11-15       Impact factor: 5.006

View more
  8 in total

1.  Functional Characterization of the ycjQRS Gene Cluster from Escherichia coli: A Novel Pathway for the Transformation of d-Gulosides to d-Glucosides.

Authors:  Keya Mukherjee; Jamison P Huddleston; Tamari Narindoshvili; Venkatesh V Nemmara; Frank M Raushel
Journal:  Biochemistry       Date:  2019-02-20       Impact factor: 3.162

2.  Deglycosylation of the Isoflavone C-Glucoside Puerarin by a Combination of Two Recombinant Bacterial Enzymes and 3-Oxo-Glucose.

Authors:  Kenichi Nakamura; Shu Zhu; Katsuko Komatsu; Masao Hattori; Makoto Iwashima
Journal:  Appl Environ Microbiol       Date:  2020-07-02       Impact factor: 4.792

3.  Characterization of L-arabinose/D-galactose 1-dehydrogenase from Thermotoga maritima and its application in galactonate production.

Authors:  Mengke Xue; Sizhong Feng; Fang Xie; Hongyang Zhao; Yemin Xue
Journal:  World J Microbiol Biotechnol       Date:  2022-09-16       Impact factor: 4.253

4.  Genome sequences of Arthrobacter spp. that use a modified sulfoglycolytic Embden-Meyerhof-Parnas pathway.

Authors:  Arashdeep Kaur; Phillip L van der Peet; Janice W-Y Mui; Marion Herisse; Sacha Pidot; Spencer J Williams
Journal:  Arch Microbiol       Date:  2022-02-24       Impact factor: 2.552

5.  A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont.

Authors:  Catherine S Liou; Shannon J Sirk; Camil A C Diaz; Andrew P Klein; Curt R Fischer; Steven K Higginbottom; Amir Erez; Mohamed S Donia; Justin L Sonnenburg; Elizabeth S Sattely
Journal:  Cell       Date:  2020-02-20       Impact factor: 41.582

6.  Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.

Authors:  Masayuki Sugiura; Moe Nakahara; Chihaya Yamada; Takatoshi Arakawa; Motomitsu Kitaoka; Shinya Fushinobu
Journal:  J Biol Chem       Date:  2018-09-17       Impact factor: 5.157

7.  Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria.

Authors:  Andrew Bell; Emmanuele Severi; Micah Lee; Serena Monaco; Dimitrios Latousakis; Jesus Angulo; Gavin H Thomas; James H Naismith; Nathalie Juge
Journal:  J Biol Chem       Date:  2020-07-15       Impact factor: 5.157

8.  The putative Escherichia coli dehydrogenase YjhC metabolises two dehydrated forms of N-acetylneuraminate produced by some sialidases.

Authors:  Takfarinas Kentache; Léopold Thabault; Alessio Peracchi; Raphaël Frédérick; Guido T Bommer; Emile Van Schaftingen
Journal:  Biosci Rep       Date:  2020-06-26       Impact factor: 3.840

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.