Literature DB >> 12538259

RnaViz 2: an improved representation of RNA secondary structure.

Peter De Rijk1, Jan Wuyts, Rupert De Wachter.   

Abstract

SUMMARY: RnaViz has been developed to easily create nice, publication quality drawings of RNA secondary structure. RnaViz 2 supports CT, DCSE, and RNAML input formats and improves on many aspects of the first version, notably portability and structure annotation. RnaViz is written using a hybrid programming approach combining pieces written in C and in the scripting language Tcl/Tk, making the program very portable and extensible. AVAILABILITY: Source code, binaries for Linux and MS Windows, and additional documentation are available athttp://rrna.uia.ac.be/rnaviz/

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Year:  2003        PMID: 12538259     DOI: 10.1093/bioinformatics/19.2.299

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  103 in total

1.  Structural map of a microRNA-122: hepatitis C virus complex.

Authors:  Phillip S Pang; Edward A Pham; Menashe Elazar; Shripa G Patel; Michael R Eckart; Jeffrey S Glenn
Journal:  J Virol       Date:  2011-11-09       Impact factor: 5.103

2.  PSEUDOVIEWER2: Visualization of RNA pseudoknots of any type.

Authors:  Kyungsook Han; Yanga Byun
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  ILM: a web server for predicting RNA secondary structures with pseudoknots.

Authors:  Jianhua Ruan; Gary D Stormo; Weixiong Zhang
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  Novel non-coding RNAs in Dictyostelium discoideum and their expression during development.

Authors:  Anders Aspegren; Andrea Hinas; Pontus Larsson; Anders Larsson; Fredrik Söderbom
Journal:  Nucleic Acids Res       Date:  2004-08-27       Impact factor: 16.971

5.  A transposable element insertion within ZmGE2 gene is associated with increase in embryo to endosperm ratio in maize.

Authors:  Pan Zhang; William B Allen; Nobuhiro Nagasawa; Ada S Ching; Elmer P Heppard; Hui Li; Xiaomin Hao; Xiaowei Li; Xiaohong Yang; Jianbing Yan; Yasuo Nagato; Hajime Sakai; Bo Shen; Jiansheng Li
Journal:  Theor Appl Genet       Date:  2012-07-07       Impact factor: 5.699

Review 6.  Searching for IRES.

Authors:  Stephen D Baird; Marcel Turcotte; Robert G Korneluk; Martin Holcik
Journal:  RNA       Date:  2006-09-06       Impact factor: 4.942

7.  Targeted access to the genomes of low-abundance organisms in complex microbial communities.

Authors:  Mircea Podar; Carl B Abulencia; Marion Walcher; Don Hutchison; Karsten Zengler; Joseph A Garcia; Trevin Holland; David Cotton; Loren Hauser; Martin Keller
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

Review 8.  Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships.

Authors:  Susan J Schroeder
Journal:  J Virol       Date:  2009-04-15       Impact factor: 5.103

9.  RNA-based regulation of transcription and translation of aureusvirus subgenomic mRNA1.

Authors:  Wei Xu; K Andrew White
Journal:  J Virol       Date:  2009-07-15       Impact factor: 5.103

10.  Cap-independent translation of human SP-A 5'-UTR variants: a double-loop structure and cis-element contribution.

Authors:  Guirong Wang; Xiaoxuan Guo; Patricia Silveyra; Scot R Kimball; Joanna Floros
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2009-01-30       Impact factor: 5.464

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