Literature DB >> 12520051

DSMM: a Database of Simulated Molecular Motions.

Giacomo Finocchiaro1, Ting Wang, Rene Hoffmann, Aitor Gonzalez, Rebecca C Wade.   

Abstract

We describe a Database of Simulated Molecular Motions (DSMM). This database is designed to serve as a single searchable site for locating movies and animations from simulations of biomolecules. DSMM is accessible via a webserver at: http://projects.villa-bosch.de/mcm/database/dsmm.

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Year:  2003        PMID: 12520051      PMCID: PMC165560          DOI: 10.1093/nar/gkg113

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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2.  Molecular dynamics simulations of biomolecules.

Authors:  Martin Karplus
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3.  Crystalline ribonuclease A loses function below the dynamical transition at 220 K.

Authors:  B F Rasmussen; A M Stock; D Ringe; G A Petsko
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4.  A database of macromolecular motions.

Authors:  M Gerstein; W Krebs
Journal:  Nucleic Acids Res       Date:  1998-09-15       Impact factor: 16.971

  4 in total
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2.  Performance analysis of a dual-tree algorithm for computing spatial distance histograms.

Authors:  Shaoping Chen; Yi-Cheng Tu; Yuni Xia
Journal:  VLDB J       Date:  2011-08-01       Impact factor: 2.868

3.  Cooperative gene regulation by microRNA pairs and their identification using a computational workflow.

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Journal:  Nucleic Acids Res       Date:  2014-05-29       Impact factor: 16.971

4.  DCMS: A data analytics and management system for molecular simulation.

Authors:  Anand Kumar; Vladimir Grupcev; Meryem Berrada; Joseph C Fogarty; Yi-Cheng Tu; Xingquan Zhu; Sagar A Pandit; Yuni Xia
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Review 6.  Visualization of macromolecular structures.

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Review 7.  Visualizing time-related data in biology, a review.

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Journal:  Brief Bioinform       Date:  2013-04-12       Impact factor: 11.622

  7 in total

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